G2294605


Basic Information

Item Value
gene id G2294605
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 9630217 ~ 9633050 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2624577
AGACGCTAACGTTAGCAATGCTAAATTagcacaaaatgtgtaaaaactaCAGTATTTGGTCAATTATGAGGTGCAAACACTgttcccctccatcctctacttACGTCATGTCTGGGGGTGGAGGGGGCAGGAAGTCATCGGGagcggggggagggaggggggagccgGGATCGAAGGCGTACGACCCTGTACTCTGGTCTAAACCATCAGGGGAATAACAGCCTTCTCCTGAACCAATACTGCCATTCAGACCCTCGAGAGATTCTCTACACACACCAAGATACATGGGtgcacagacaacaacaacaaaacacacacacaaaaaaaaaaaatagtatttTTGATCAATGACATGACACCACAATTAAACCGTTTAAAACCATTCTATAGGACAACCCTCTCCCCTACAGACTCAGAACCTCCCTCCTTCatattctctcactctctccttctccacttcaTATAGCCTCTCTCTCCGTTCTCACTCCCTCACCCTGTTCTCACTCCCTCACCctgttctcactctctccttctccacttcatatagcctctctctccctgttctcactccctcaccctgttctcactccctcaccctgttctcactctctccttctccacttcatatagcctctctctcccttctcactcCCTCACCTTGTTCTTACTCCCTCACCCTGTTCTCACTCCCTCACCCTGTTCTCACTCCCTCACCCTGTTCTCACTCCCTCACCCTGTTCTCACTCCCTCACCctgttctcactctctccttctccacttcatatagcctctctctccattctcactCCCTCACCTTGTTCTCACTCCCtcaccctgttctctccctcaccctgttctcactctctccttctccacttcaTATAGCCTCTGTCTCCGTTCTCACTCCCTCACCTTGTTCTCACTCCGTCACCCTGTTCTCACTCCCTCACCTTGTTCTCACTCCCTCACCTTGTTCTCACTCCCTCACCCTGTTCTCACTCCCTCACCTTGTTCTCACTCCCTCACCTTGTTCTCACTCCCTCACCTTGTTCTCACTCCCTCACCCTGTTCTCACTCCCTCACCCTGTTCTCACTCCCTCACCCTGTTCTCACTCCCTCACCctgttctcattctctctccatcgctctctttttttctcattctctctccatctctcaccccaTGTCATTCTTGGGTACCACAAACTCTTCCCCCATCTTGCGTCGTTCCCACTCATCCTTTCTGGTCTTGATCTTTCTGGGATTCAGAGTCCGCATATTTTGattgtccttcttctccttccTGTGTTTGCGTCTCTCCTTCATGATGTCCTTGGTGTCCTGCAGCATCTTCTCCTTCCACAGGTCAAAGAAGTAAGACGGGTCGGTGTAGAACTTCAGAGCATCCTTCCCATCGTCCCTAATCATGACAACAGGctaaatcagtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgcagggtcgCTTAGGGGCcccaaccccccaaaaaaagagtATGAATAGTAGAATAGACAAGGAGAAAGTTCGTCCCTGAATTAGGCATGTCAGCTAAACATTTCAGAAcggtagtctagccagctacagtgccttcaaaaagtacactacatacacaaaagtatgtggacaccccttcaaaatgagtggatttggctatttcagccacccacgttgctgaccggtgtataaaatcgagcacaccgccatgcaatctccatagacaaacaatggcagtaaaatggcccttactgaagagctcactgAATTTCAATGTGGtaacgtcataggatgccacctttccaacaagtcagttctttacatttctgccctgctagagctgcccctgtcaactgtaagtgctgaacgtctaggagcaacaacggctcagcagtgaagtggtaggccacacaagctcacagaacgggactgcagaGTGCTGAAGAGCATTAAAATGTTGTCCTTagtgcctctggaagcaacgtcagcacaagcactgttagttgggagcttcatgagatggttttccatggccgagcagcctaagATCAATGCCAACCttggctggaggggtgtaaagctcgctcccattggactctggagcagtggaaacgtgttctctggagtgatgaatgacatttcaccatctggcagtccggcagtcgaatctgggtttggcggattccaggagaacactacccgccccaatgcatagtgccaactgtaatgtttggtggagtaggaataatggtctggggctgtttttcatggttcaggccccttagttccaatgaagagaaatattaacgctacagcacacaatgacattctagatgattctgtgcttccaactttgtggcaacagtttggggaaggccctttcctgtttcagcatgacaatacccccgtgcacaaagtgaagtccatccagaaatggtttgtcgagatcagtgtggaataacttgacttgcttgcacagagccctgaactcaacctcatcaaatacctttgggatga

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2624577 True 2537 lncRNA 0.49 2 9630217 9633050

Neighbor

gene id symbol gene type direction distance location
LOC110487884 LOC106570642 coding upstream 5522 9622027 ~ 9624695 (+)
cck-t cck-t coding upstream 56437 9568052 ~ 9573780 (+)
LOC110489367 LOC106570646 coding upstream 97555 9489794 ~ 9532662 (+)
LOC110487883 LOC106570652 coding upstream 200529 9410313 ~ 9429688 (+)
LOC110487882 LOC106570647 coding upstream 243873 9382727 ~ 9386344 (+)
LOC110487893 LOC106570636 coding downstream 416146 10049196 ~ 10064026 (+)
LOC118946535 NA coding downstream 458253 10091303 ~ 10092528 (+)
LOC118946540 NA coding downstream 688983 10318805 ~ 10323588 (+)
LOC110513484 LOC106570612 coding downstream 771322 10404372 ~ 10427604 (+)
si:ch211-199g17.9 syce1 coding downstream 804627 10437677 ~ 10441669 (+)
G2294599 NA non-coding upstream 118 9628203 ~ 9630099 (+)
G2294664 NA non-coding upstream 4733 9625269 ~ 9625484 (+)
G2294661 NA non-coding upstream 11991 9618011 ~ 9618226 (+)
G2294649 NA non-coding upstream 45031 9584300 ~ 9585186 (+)
G2294636 NA non-coding upstream 75076 9549365 ~ 9555141 (+)
G2294665 NA non-coding downstream 2093 9635143 ~ 9635531 (+)
G2294690 NA non-coding downstream 77947 9710997 ~ 9711541 (+)
G2294691 NA non-coding downstream 88218 9721268 ~ 9723084 (+)
G2294692 LOC106594721 non-coding downstream 96526 9729576 ~ 9774800 (+)
G2294742 NA non-coding downstream 134164 9767214 ~ 9768161 (+)
G2294452 LOC106570648 other upstream 292462 9335335 ~ 9337755 (+)
G2294081 NA other upstream 527031 9094792 ~ 9103186 (+)
G2293943 LOC106570655 other upstream 782965 8844013 ~ 8847252 (+)
G2293942 NA other upstream 834715 8791101 ~ 8876464 (+)
G2293829 NA other upstream 1118476 8510872 ~ 8511770 (+)
G2294925 NA other downstream 497066 10130116 ~ 10131651 (+)
LOC110487904 snrpd1 other downstream 881904 10509464 ~ 10521398 (+)
G2296150 LOC106570575 other downstream 1652443 11285493 ~ 11290303 (+)
G2296278 NA other downstream 1930497 11563547 ~ 11564590 (+)

Expression


Co-expression Network