G2294823


Basic Information

Item Value
gene id G2294823
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 9945990 ~ 9976161 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2624847
GTtagttagccagccagctagctagctcctGCCATCCAGACAACTACATACAAGCAAAACAAACAAATACTTCCGGTGTATTTGGGTCTGAAAATATATGTTATCCAATGCAAGCAGAAAACAAACAGCCATTAATTTCTCAGCGGTGTATGCTAGGGTAACTAGGGTAACGCAACCTCTTTGATAACATCCGGAAATCAGTAACGTTAGCGAGCAGTCTCCTCTCATCACGTTCGCCAGCCGGAAATAGCATTGTTGCCCACAACTGGATTAATCCTTATTTAATACTGTGGATCGATTATCACTGCGAACTACAGTCCTGTCCACCTGGGCCAGAACAACAAAAACGGAACATAGCTTTGTGTGTCAACTAGATAACAGTCAGTCGCCGAGGCACAACTCACACCATCCAACTAACTAAACAAATCGAGGCCAATTAAGACATGAAAATGGACCTACCCAGCATGCCTCAAGAGAACCTGTCAGCAGGAGACAGATGCCCTGCTTCAGGCCCACACGCACCAGCCAACCAGGAGCCCCTGACTGCTTGCACGCTGTCAGACCCATCCCTCCCTCAAGCGCCAAAAAGAGACGTTGGGTCCCTGGCTGCAGTACGATCTGATACCTGAGGAGGGCGATGATGAGCGGCAGCTGCAGCAGCAGCTACAGAAAGAGCCAGTTAACCTCCACAGGACTcacacaagaagaagaagaagagaacaaagTAAGGACCACAGAGTGAAATAGAACACAATGTTTTATATTGCTATCTCTATGGTAAGgtatcttttttttcttttttttatgttcacctttatttaggtAAGCcagatgagaacaagttctcatttacaaatgcaacctggccaagataaagcaatgcagtgtgacacaaaaaacaacacagagttacacatgagataaacaaacgtacagtcaatagcacaatagagaagtctatgtacagtgtgtgcaagtgaagtaagattagggaggtaaggcaataaaaagacggtagtggcgaaataattacaatttcgcaaataaacacgggagtgatagatgtgcagaagatgaatgtgcaagaagagatactggggtgcaaaggagcacaaataaataaataacaatatggggatgaggtggttggatgggctatttacagatgggctatgtacagatgcaacgatctgtaagctgctctgatagctgatgcttaaagttagtgagggagatatgagtctccagcttcagtgatttatgcaatttgttccagtcattggcagcagagaactagaaggaaaggcggccaaaggaggaattggctttgggtgtgaccagtgaaatatacctgctaggTAAGGCAGGGacttagcaaagacttatagatgacctggagccagtgggtttggcgacgaatatgaagcgagggccagccaactagagcatacaggtcacagtggtgggtggtatatggggctttggtggcataaacagatggcactgtgatagactgcatccaatatgctgattagagtgttggaggctattttgtaaatgacatcgccaaagtcaaggatcggtaggatatgtttggcagcgtgagtgaaggatgctttgttgcgaaataggaagccgattctagatttaattttggattggagatgctgaatgtgagtctggaaggagagtttagagattgcatcatctgtggatctatttgggcagtatgcaaactggagtgggtctagggtttctggaataatggtgttgatgtgagccattaccagcctttcaaagcacttcatggctaccgacgtgagtgctacgggtctgtagtcatttaggcaggttgcctttgtgttcttgggcacagggactatggtggtctgcttgaaacctgttggtattacagactcaatcagggatatgttgaaaatgtcagtgaagacacctgccagttggtcagcacatgcccggagcacacgttctggtaatccgtctggccctgcggccttgtgaatgttgacctgtttaaaggtcttactcatgttggctacggagagcgcgatcacacagtcgtccggaacagctggtgctctcatgcatgcctcagtgttgcttgcctcgaagcgagcatagaagtgatttagctcatctggtaggctcgtgtcactgggcagctcgtggctgtgcttccctttgtagtctgtaatagtttgcaagccctgccacaaaagacgagcgtcggagccggtgtcgtatgattcaatcttagccctgtattggcgctttgcctgtttgatggttcgtcggagggcatagcaggatttcttataagcttccgggttagcgtcctgcaccttgaaagcagcagctccaccctttagctcagtgtgaatgttgcctgtaatccatagcttctggtttgggtatgtacgcacagtcactgtggggacgatgtcctcgatgcacttattgataaagccagcgactgatgtggtgtattcctcaatgcaatcggaagaatcccggaacatgtccagtctgtgatagtaaaacagtcctgtagtttagcaacCTGCtgcatctgaccactttttttatagaccaagtcactagtgcttcctgctttaatttttgcttgtaagcaggaatcaggaggatagaattgtggtcataTTCACCAAATgtagggcaagggagagctttgtgtgtgagtacaggtgatctagaatttttttccctctggttgcacatttaacatgttgatagagatttggtagaactgatttaagtttccctgcattaaagtctctggccactaggagcgccg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2624847 True 2836 lncRNA 0.46 3 9945990 9976161

Neighbor

gene id symbol gene type direction distance location
LOC110487884 LOC106570642 coding upstream 321295 9622027 ~ 9624695 (+)
cck-t cck-t coding upstream 372210 9568052 ~ 9573780 (+)
LOC110489367 LOC106570646 coding upstream 413328 9489794 ~ 9532662 (+)
LOC110487883 LOC106570652 coding upstream 516302 9410313 ~ 9429688 (+)
LOC110487882 LOC106570647 coding upstream 559646 9382727 ~ 9386344 (+)
LOC110487893 LOC106570636 coding downstream 73035 10049196 ~ 10064026 (+)
LOC118946535 NA coding downstream 115142 10091303 ~ 10092528 (+)
LOC118946540 NA coding downstream 345872 10318805 ~ 10323588 (+)
LOC110513484 LOC106570612 coding downstream 428211 10404372 ~ 10427604 (+)
si:ch211-199g17.9 syce1 coding downstream 461516 10437677 ~ 10441669 (+)
G2294856 NA non-coding upstream 16136 9928964 ~ 9929854 (+)
G2294757 NA non-coding upstream 66603 9878820 ~ 9879387 (+)
G2294769 NA non-coding upstream 68718 9876615 ~ 9877272 (+)
G2294840 NA non-coding upstream 70796 9874961 ~ 9875194 (+)
G2294763 NA non-coding upstream 136437 9808931 ~ 9809553 (+)
G2294810 NA non-coding downstream 4251 9980412 ~ 9982511 (+)
G2294813 NA non-coding downstream 6999 9983160 ~ 9988293 (+)
G2294887 NA non-coding downstream 30380 10006541 ~ 10006747 (+)
G2294888 NA non-coding downstream 30729 10006890 ~ 10007115 (+)
G2294889 NA non-coding downstream 34954 10011115 ~ 10011412 (+)
G2294452 LOC106570648 other upstream 608235 9335335 ~ 9337755 (+)
G2294081 NA other upstream 842804 9094792 ~ 9103186 (+)
G2293943 LOC106570655 other upstream 1098738 8844013 ~ 8847252 (+)
G2293942 NA other upstream 1150488 8791101 ~ 8876464 (+)
G2293829 NA other upstream 1434249 8510872 ~ 8511770 (+)
G2294925 NA other downstream 153955 10130116 ~ 10131651 (+)
LOC110487904 snrpd1 other downstream 538793 10509464 ~ 10521398 (+)
G2296150 LOC106570575 other downstream 1309332 11285493 ~ 11290303 (+)
G2296278 NA other downstream 1587386 11563547 ~ 11564590 (+)

Expression


Co-expression Network