G2294931


Basic Information

Item Value
gene id G2294931
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 10138020 ~ 10167492 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2624974
cacaacctggacaggaggaacattcaactatatattcactacctggacaggaggaacattcaactatatattcactacctggacaggaggagaggtacattcaactatatattcactacctggacaggaggagaggtacattcaactatatattcactacctggacaggaggaacattcaactatatattcactacctggacaggaggagaggtacattcaactatatattcactacctggacaggaggagaggaacattcaactatatattcactacctggacaggaggagaggaacattcaactatatattcactacctggacaggaggagaggtacattcaactatatattcactacctggacaggaggaacattcaactatatattcactacctggacaggaggaacattcaactatatattcactacctggacaggaggaacattcaactatatattcactacctggacaggaggagaggaacattcaactatatattcactacctggacaggaggaacattcaactatatattcactatctggacaggaggaacattcaactatatattcactacctggacaggaggaacattcaactatatattcactacctggacaggaggagaggtacat
>TU2624975
cacaacctggacaggaggaacattcaactatatattcactacctggacaggaggaacattcaactatatattcactacctggacaggaggagaggtacattcaactatatattcactacctggacaggaggagaggtacattcaactatatattcactacctggacaggaggaacattcaactatatattcactacctggacaggaggagaggtacattcaactatatattcactacctggacaggaggagaggaacattcaactatatattcactacctggacaggaggagaggaacattcaactatatattcactacctggacaggaggagaggtacattcaactatatattcactacctggacaggaggaacattcaactatatattcactacctggacaggaggaacattcaactatatattcactacctggacaggaggaacattcaactatatattcactacctggacaggaggagaggaacattcaactatatattcactacctggacaggaggaacattcaactatatattcactacctggacaggaggaacattcaactatatattcactacctggacaggaggaacattcaactatatattcactatctggacaggaggagaggtacattcaactatatattcactacctggacaggaggaacattcaactatatattcactacctggacaggaggagaggaacattcaactatatattaactacctggacaggaggaacattcaactatatattcactacctggacaggaggagaggtacattcaactatatattcac
>TU2624976
cacaacctggacaggaggaacattcaactatatattcactacctggacaggaggaacattcaactatatattcactacctggacaggaggagaggtacattcaactatatattcactacctggacaggaggagaggtacattcaactatatattcactacctggacaggaggaacattcaactatatattcactacctggacaggaggaacatacaactatatattcactacctggacaggaggaacattcaactatatattctctacctggacaggaggaacattcaactatatattcactacctggacaggaggaacattcaactatatattcactacctggacaggaggaacattc
>TU2624977
cacaacctggacaggaggaacattcaactatatattcactacctggacaggaggaacattcaactatatattcactacctggacaggaggagaggtacattcaactatatattcactacctggacaggaggagaggtacattcaactatatattcactacctggacaggaggaacattcaactatatattcactacctggacaggaggagaggtacattcaactatatattcactacctggacaggaggagaggaacattcaactatatattcactacctggacaggaggagaggaacattcaactatatattcactacctggacaggaggagaggtacattcaactatatattcactacctggacaggaggaacattcaactatatattcactacctggacaggaggaacattcaactatatattcactacctggacaggaggaacattcaactatatattcactacctggacaggaggagaggaacattcaactatatattcactacctggacaggaggaacattcaactatatattcactacctggacaggaggaacattcaactatatattcactacctggacaggaggaacattcaactatatattcactatctggacaggaggaacattcaactatatattcactacctggacaggaggaacattcaactatatattcactacctggacaggaggagaggtacat
>TU2624978
cacaacctggacaggaggaacattcaactatatattcactacctggacaggaggaacattcaactatatattcactacctggacaggaggagaggtacattcaactatatattcactacctggacaggaggagaggtacattcaactatatattcactacctggacaggaggaacattcaactatatattcactacctggacaggaggagaggtacattcaactatatattcactacctggacaggaggagaggaacattcaactatatattcactacctggacaggaggagaggaacattcaactatatattcactacctggacaggaggagaggtacattcaactatatattcactacctggacaggaggaacattcaactatatattcactacctggacaggaggaacattcaactatatattcactatctggacaggaggaacattcaactatatattcactacctggacaggaggaacattcaactatatattcactacctggacaggaggagaggtacat
>TU2624979
cacaacctggacaggaggaacattcaactatatattcactacctggacaggaggaacattcaactatatattcactacctggacaggaggagaggtacattcaactatatattcactacctggacaggaggagaggtacattcaactatatattcactacctggacaggaggaacattcaactatatattcactacctggacaggaggagaggtacattcaactatatattcactacctggacaggaggagaggaacattcaactatatattcactacctggacaggaggagaggaacattcaactatatattcactacctggacaggaggagaggtacattcaactatatattcactacctggacaggaggaacattcaactatatattcactacctggacaggaggaacattcaactatatattcactacctggacaggaggaacattcaactatatattcactacctggacaggaggagaggaacattcaactatatattcactacctggacaggaggaacattcaactatatattcactacctggacaggaggaacattcaactatatattcactatctggacaggaggaacattcaactatatattcactacctggacaggaggaacattcaactatatattcactacctggacaggaggagaggtacat
>TU2624980
cacaacctggacaggaggaacattcaactatatattcactacctggacaggaggaacattcaactatatattcactacctggacaggaggagaggtacattcaactatatattcactacctggacaggaggagaggtacattcaactatatattcactacctggacaggaggaacattcaactatatattcactacctggacaggaggagaggtacattcaactatatattcactacctggacaggaggagaggaacattcaactatatattcactacctggacaggaggagaggaacattcaactatatattcactacctggacaggaggagaggtacattcaactatatattcactacctggacaggaggaacattcaactatatattcactacctggacaggaggaacattcaactatatattcactacctggacaggaggaacattcaactatatattcactacctggacaggaggagaggaacattcaactatatattcactacctggacaggaggaacattcaactatatattcactacctggacaggaggagaggaacattcaactatatattcactacctggacaggaggagaggaacattc

Function

NR:

description
uncharacterized protein LOC111197029

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2624974 False 639 lncRNA 0.41 2 10138020 10157964
TU2624975 False 809 lncRNA 0.40 2 10138020 10167492
TU2624976 False 359 lncRNA 0.40 2 10138020 10142332
TU2624977 False 711 lncRNA 0.40 2 10138020 10157964
TU2624978 False 526 lncRNA 0.41 2 10138020 10157964
TU2624979 False 675 lncRNA 0.40 2 10138020 10157964
TU2624980 True 610 lncRNA 0.41 2 10138020 10142537

Neighbor

gene id symbol gene type direction distance location
LOC118946535 NA coding upstream 45492 10091303 ~ 10092528 (+)
LOC110487893 LOC106570636 coding upstream 73994 10049196 ~ 10064026 (+)
LOC110487884 LOC106570642 coding upstream 513325 9622027 ~ 9624695 (+)
cck-t cck-t coding upstream 564240 9568052 ~ 9573780 (+)
LOC110489367 LOC106570646 coding upstream 605358 9489794 ~ 9532662 (+)
LOC118946540 NA coding downstream 154541 10318805 ~ 10323588 (+)
LOC110513484 LOC106570612 coding downstream 236880 10404372 ~ 10427604 (+)
si:ch211-199g17.9 syce1 coding downstream 270185 10437677 ~ 10441669 (+)
LOC110489372 LOC106570609 coding downstream 298873 10466365 ~ 10490055 (+)
LOC110489373 LOC106570620 coding downstream 339601 10507093 ~ 10509282 (+)
G2294925 NA non-coding upstream 6369 10130116 ~ 10131651 (+)
G2294923 NA non-coding upstream 13704 10124055 ~ 10124316 (+)
G2294922 NA non-coding upstream 14178 10123624 ~ 10123842 (+)
G2294905 NA non-coding upstream 44009 10086018 ~ 10094011 (+)
G2294893 NA non-coding upstream 118516 10018654 ~ 10019504 (+)
G2294941 NA non-coding downstream 3044 10170536 ~ 10185915 (+)
G2294951 NA non-coding downstream 35288 10202780 ~ 10202989 (+)
G2294958 clasp2 non-coding downstream 45715 10213207 ~ 10226042 (+)
G2294962 NA non-coding downstream 62342 10229834 ~ 10250320 (+)
G2294964 NA non-coding downstream 66235 10233727 ~ 10234343 (+)
G2294452 LOC106570648 other upstream 800265 9335335 ~ 9337755 (+)
G2294081 NA other upstream 1034834 9094792 ~ 9103186 (+)
G2293943 LOC106570655 other upstream 1290768 8844013 ~ 8847252 (+)
G2293942 NA other upstream 1342518 8791101 ~ 8876464 (+)
LOC110487904 snrpd1 other downstream 347462 10509464 ~ 10521398 (+)
G2296150 LOC106570575 other downstream 1118001 11285493 ~ 11290303 (+)
G2296278 NA other downstream 1396055 11563547 ~ 11564590 (+)
LOC110487932 LOC106570557 other downstream 1739215 11906205 ~ 11910366 (+)

Expression


Co-expression Network