G2294941


Basic Information

Item Value
gene id G2294941
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 10170536 ~ 10185915 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2624994
cagatttgtaccttgtcagctcaggggtttgaacttgcaaccttcgggtactagtccaccgctctaaccactatgctaccctgccgccccgtgtgtcgtgtgtcatgtgtgtgtgcaccttGAAGACTTTGATTTGACAGGAGGCAGAGTGGAGGTGTTCAGTGGACTCTCCGTTGTCTCCCTGTCTGAAGGTGTCGATCTGGATCCTGAAGGGaactcccttctctcctccatgCTTCCTGGGGGTGAACTCTGTACTGATGCAgtgaacctacacacacacacgaggaagGTTAGGTTGAAAGATGGAGAGAATAGAGACTGAGTTAATGTGACTAAAGGAGGAGTGAGTGTTACCTGCACAAACACAGAGGCTCTCCTGTTGAGGTCCCAGAGAAACTCGGCGGCGTTGAGCTGGGAAGGGTCGGCCTTGGGCTCCATGATACCCACTGACAAGGggatgtctacacacacacacacacacacatttactgacagagaaatacacacacacacacacacattacatacatgtactgacagagaaatacacacacacacacacacacgtactgacagagaaatacacacacacacacacacattacatacatgtactgacagagaaatacacacacacacacacactacatacatgtactgacagagaaatacacacacactacatacatgtagtgacagagaaacacacacacacacacttgtgtgtTCTTACCGATGTCTAGGAGACGGTCTCCAGGGCGATTCCACTTCCACCCCTCCAGCTGCCGATGCTCTGTGTACTGGAGTCTCCTGtcatggaacaccaccctaacgatactctacacacacacacacacacacacgttatggaacaccaccctaacgatactctacacacacacacgttatggaacaccaccctaacgatactctacacacacacacacacacgttatggaacaccaccctaacgatactctacatacacacacacacgttatggaacaccaccctaacgatactctacactagaggtcgaccgattatgatttttcaacaccaataccgattattggaggaccaaagaaagccgataccgattaatctgacaattttttaataatgtatttgtgacaattacaacaatactgaatgaataaaatcaatttagcctcaaaatgaaacatgttcaatttggtttaaataatgcaaaaacaaagtgttggagaaaaaagtaaaagtgcaatatgtgccatgtgagaaagctaacgtttcagttccttgctcagaacatatgaaagctggtggttccttttaacatgagtcttcaatattcccaggtaagaagttttaggttgtagttattataggaattataggactatttccctctataccatttgtatttcattaacctttgactattggatgttcttataggcactttagtattgccagtgtaacagtatagcttcagtccctctcctcgctcctccctgggctcgaaccagcaacacaacgacaacagccaccctcgaagcagcgttacccatgcagagcaacgGGAACAAcaactagaaggctcagagcgagtgaggtttgaaacgctattagcgcgcaccccgctaactagctagccatttcacatcggttacaccagcctcatctcgggagttgataggcttgaag
>TU2624992
cgatactctacacacacgttatggaacaccaccctaacgatactctacacacacacacacgttatggaacaccaccctaacgttactctacacacacgttatggaacaccaccctaacgatactctacacacacgttatggaacaccaccctaacgttactctacacacacgttatggaacaccaccctaacgatactctacacacacacacacacgttatggaacaccaccctaacgttactctacacacacgttatggaacaccaccctaacgatactctacacacacgttatggaacaccaccctaacgatactctacacacacgttatggaacaccaccctaacgatactctacacacacgttatggaacaccaccctaacgttactctacacacacacacacgttatggaacaccaccctaacgttactctacacacacgttatggaacaccaccctaacgatactctacacacacgttatggaacaccaccctaacgatactctacacacacacacgttatggaacaccaccctaacgttactctacacacacacacgttatggaacaccaccctaacgttactctacacacacgttatggaacaccaccctaacgatactctacacacacacacgttatggaacaccaccctaacgatactctacacacacacacgttatggaacaccaccctaacgatactctacacacacacacacacgttatggaacaccaccctaacgatactctacacacacacacgttatggaacaccaccctaacgatactctacacacacacacacgttatggaacaccaccc
>TU2624991
acacacacacacgttatggaacaccaccctaacgatactctacacacacacacacgttatggaacaccaccctaacgatactctacacacacacacacacgttatggaacaccaccctaacgatactctacacacacgttatggaacaccaccctaacgttactctacacacacacacgttatggaacaccaccctaacgatactctacacacacacacacacgttatggaacaccaccctaacgatactctacacacacacacgttatggaacaccaccctaacgatactctacacacacacacacgttatggaacaccaccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2624994 False 1692 lncRNA 0.45 4 10170536 10185915
TU2624992 False 828 lncRNA 0.46 3 10179162 10183927
TU2624991 True 324 lncRNA 0.47 2 10183555 10183927

Neighbor

gene id symbol gene type direction distance location
LOC118946535 NA coding upstream 78008 10091303 ~ 10092528 (+)
LOC110487893 LOC106570636 coding upstream 106510 10049196 ~ 10064026 (+)
LOC110487884 LOC106570642 coding upstream 545841 9622027 ~ 9624695 (+)
cck-t cck-t coding upstream 596756 9568052 ~ 9573780 (+)
LOC110489367 LOC106570646 coding upstream 637874 9489794 ~ 9532662 (+)
LOC118946540 NA coding downstream 136118 10318805 ~ 10323588 (+)
LOC110513484 LOC106570612 coding downstream 218457 10404372 ~ 10427604 (+)
si:ch211-199g17.9 syce1 coding downstream 251762 10437677 ~ 10441669 (+)
LOC110489372 LOC106570609 coding downstream 280450 10466365 ~ 10490055 (+)
LOC110489373 LOC106570620 coding downstream 321178 10507093 ~ 10509282 (+)
G2294931 NA non-coding upstream 3044 10138020 ~ 10167492 (+)
G2294925 NA non-coding upstream 38885 10130116 ~ 10131651 (+)
G2294923 NA non-coding upstream 46220 10124055 ~ 10124316 (+)
G2294922 NA non-coding upstream 46694 10123624 ~ 10123842 (+)
G2294905 NA non-coding upstream 76525 10086018 ~ 10094011 (+)
G2294951 NA non-coding downstream 16865 10202780 ~ 10202989 (+)
G2294958 clasp2 non-coding downstream 27292 10213207 ~ 10226042 (+)
G2294962 NA non-coding downstream 43919 10229834 ~ 10250320 (+)
G2294964 NA non-coding downstream 47812 10233727 ~ 10234343 (+)
G2294970 NA non-coding downstream 55679 10241594 ~ 10242212 (+)
G2294452 LOC106570648 other upstream 832781 9335335 ~ 9337755 (+)
G2294081 NA other upstream 1067350 9094792 ~ 9103186 (+)
G2293943 LOC106570655 other upstream 1323284 8844013 ~ 8847252 (+)
G2293942 NA other upstream 1375034 8791101 ~ 8876464 (+)
LOC110487904 snrpd1 other downstream 329039 10509464 ~ 10521398 (+)
G2296150 LOC106570575 other downstream 1099578 11285493 ~ 11290303 (+)
G2296278 NA other downstream 1377632 11563547 ~ 11564590 (+)
LOC110487932 LOC106570557 other downstream 1720792 11906205 ~ 11910366 (+)

Expression


Co-expression Network