G2294958 (clasp2)


Basic Information

Item Value
gene id G2294958
gene name clasp2
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 10213207 ~ 10226042 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2625019
tgtgtgtgtgtgtgtatgtgtgtgtatgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtaccatcaGTTTGCTGGTCTGATTCGTCCAATGAAGTATCTTTGACGTTGTGTTTAAAGGGGGAGTCTGTAAAGGGGTCTCGGGACCCccggggagaagaggagagcagggggGTGTTCAGAAGAGAAGTCTTGTTGTCCAGAGCAGTGCGGACTCCATCCACCTGGTCAGCACCACCacccgttTCGTTCATGTCTTCCTGACTGCGGACGGAGAAGTTCTGGATGGCCTCTGTAACTCCTCTCAGACTACTGTAGATGTCGTCCGAGTTCATGTTCTCTGTGTCGTAGTCAAACGCACCGAGTGTGGATGTGTTCAGTGATGTGTTggtaggagaggtgagggggctgGACCAGCTGGCAGGAGAGCGGGGGGTGTGGCGTGTCATGGGGCTTCCCATTGGGGCCTGTGCAGTGTTGCCGGTGTTCCTCAGGTGGTTCTGTAGCAGTTTGGTGGCTCCGTCCTGGAAGGTCTTGGGCAGGGCTGCCAGCAGCATGGTGAACTCTGGAGTGTTCAACTGGAACAAGGAGATCAGTACCAACTGGGCCGCcttCCTGACGTCAGAGCTCTTGGGCTCTGTGGTCCAGGTGATGATGCGAGACACAGCCAGGCGCGTCTCACTGGAGTTCACAAAGTCCTGAGGATCCATCTGCAGGGTCAAGGTCTCAATGTACTTCAGAACAGCCACcttcacCTTGAGGTTTGGTGTCTGAGTCTGGTCCACAGTGAACCTCATGAGGATGGTGAACTGGAGGTCGTTGGGGAAAGACTCTCGTGTGATGTCCAGTGCTCTCTGGACCTTGGCCTGGACAGACCCCAGCAGGTCAGCTCCCATCTTCTTCAGCAGCTGGGTGAGCAGGACGAACAGCCAGTCCTGCAGGTCTTCTCTGTGCACCAGGACAAAGTCCACTAGGGTCTCCAAGAACATACTGAACACCTTGGGAGAGACAGGGGTCACGGGGTTACACACAGGAACAAACAGACCCCTGTACTACTAGGATGAGGGGAGCTCAGAGTCCCATGCATCAGACAACTACGCTCACTTATCAACCGATCAA
>TU2625023
tgtgtgtgtgtgtgtatgtgtgtgtatgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtaccatcaGTTTGCTGGTCTGATTCGTCCAATGAAGTATCTTTGACGTTGTGTTTAAAGGGGGAGTCTGTAAAGGGGTCTCGGGACCCccggggagaagaggagagcagggggGTGTTCAGAAGAGAAGTCTTGTTGTCCAGAGCAGTGCGGACTCCATCCACCTGGTCAGCACCACCacccgttTCGTTCATGTCTTCCTGACTGCGGACGGAGAAGTTCTGGATGGCCTCTGTAACTCCTCTCAGACTACTGTAGATGTCGTCCGAGTTCATGTTCTCTGTGTCGTAGTCAAACGCACCGAGTGTGGATGTGTTCAGTGATGTGTTggtaggagaggtgagggggctgGACCAGCTGGCAGGAGAGCGGGGGGTGTGGCGTGTCATGGGGCTTCCCATTGGGGCCTGTGCAGTGTTGCCGGTGTTCCTCAGGTGGTTCTGTAGCAGTTTGGTGGCTCCGTCCTGGAAGGTCTTGGGCAGGGCTGCCAGCAGCATGGTGAACTCTGGAGTGTTCAACTGGAACAAGGAGATCAGTACCAACTGGGCCGCcttCCTGACGTCAGAGCTCTTGGGCTCTGTGGTCCAGGTGATGATGCGAGACACAGCCAGGCGCGTCTCACTGGAGTTCACAAAGTCCTGAGGATCCATCTGCAGGGTCAAGGTCTCAATGTACTTCAGAACAGCCACcttcacCTTGAGGTTTGGTGTCTGAGTCTGGTCCACAGTGAACCTCATGAGGATGGTGAACTGGAGGTCGTTGGGGAAAGACTCTCGTGTGATGTCCAGTGCTCTCTGGACCTTGGCCTGGACAGACCCCAGCAGGTCAGCTCCCATCTTCTTCAGCAGCTGGGTGAGCAGGACGAACAGCCAGTCCTGCAGGTCTTCTCTGTGCACCAGGACAAAGTCCACTAGGGTCTCCAAGAACATACTGAACACCTTcttactgtgggggTCTGCAAACATCCTGGTGAAAATCTCACACAACCTCTTCAGCTCCACACGactgtagagacacacacacacacacacacacacaggtgaataCAGCTGTGGTAGCATGTATTGCATCGGATAAACTTTTTCTCTCGACTGCATTGTGATAGGCTGCCAGGTGAAACCCTGCTTTGTGATAGGCTGCCAGGTGAAACCCTGCTTTGTGATAGGCTGACCTGAGGGTGCGTTGATTCTTCAGTAGAGCCTGTAGACCCAGAagcccctccttcctctccgacCAGTTGGCACTGGCACAGCGGTTCAACACC
>TU2625022
tccatctctctcgTGTAGGGAGGGTTCAcaatcacagtctctctctcctcaccgttTCGTTCATGTCTTCCTGACTGCGGACGGAGAAGTTCTGGATGGCCTCTGTAACTCCTCTCAGACTACTGTAGATGTCGTCCGAGTTCATGTTCTCTGTGTCGTAGTCAAACGCACCGAGTGTGGATGTGTTCAGTGATGTGTTggtaggagaggtgagggggctgGACCAGCTGGCAGGAGAGCGGGGGGTGTGGCGTGTCATGGGGCTTCCCATTGGGGCCTGTGCAGTGTTGCCGGTGTTCCTCAGGTGGTTCTGTAGCAGTTTGGTGGCTCCGTCCTGGAAGGTCTTGGGCAGGGCTGCCAGCAGCATGGTGAACTCTGGAGTGTTCAACTGGAACAAGGAGATCAGTACCAACTGGGCCGCcttCCTGACGTCAGAGCTCTTGGGCTCTGTGGTCCAGGTGATGATGCGAGACACAGCCAGGCGCGTCTCACTGGAGTTCACAAAGTCCTGAGGATCCATCTGCAGGGTCAAGGTCTCAATGTACTTCAGAACAGCCACcttcacCTTGAGGTTTGGTGTCTGAGTCTGGTCCACAGTGAACCTCATGAGGATGGTGAACTGGAGGTCGTTGGGGAAAGACTCTCGTGTGATGTCCAGTGCTCTCTGGACCTTGGCCTGGACAGACCCCAGCAGGTCAGCTCCCATCTTCTTCAGCAGCTGGGTGAGCAGGACGAACAGCCAGTCCTGCAGGTCTTCTCTGTGCACCAGGACAAAGTCCACTAGGGTCTCCAAGAACATACTGAACACtaccttactgtgggggTCTGCAAACATCCTGGTGAAAATCTCACACAACCTCTTCAGCTCCACACGactgtagagacacacacacacacacacacacacaggtgaataCAGCTGTGGTAGCATGTATTGCATCGGATAAACTTTTTCTCTCGACTGCATTGTGATAGGCTGCCAGGTGAAACCCTGCTTTGTGATAGGCTGCCAGGTGAAACCCTGCTTTGTGATAGGCTGACCTGAGGGTGCGTTGATTCTTCAGTAGAGCCTGTAGACCCAGAagcccctccttcctctccgacCAGTTGGCACTGGCACAGCGGTTCAACACC

Function

symbol description
clasp2 Predicted to enable microtubule plus-end binding activity. Predicted to be involved in several processes, including exit from mitosis; microtubule cytoskeleton organization; and regulation of microtubule polymerization or depolymerization. Predicted to act upstream of or within cell division. Predicted to be located in microtubule; ruffle membrane; and trans-Golgi network. Predicted to be active in basal cortex; kinetochore; and microtubule cytoskeleton. Orthologous to human CLASP2 (cytoplasmic linker associated protein 2).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2625019 False 1124 lncRNA 0.55 7 10213207 10221968
TU2625023 False 1329 lncRNA 0.54 10 10213207 10226042
TU2625022 True 1134 lncRNA 0.54 9 10214648 10226042

Neighbor

gene id symbol gene type direction distance location
LOC118946535 NA coding upstream 120679 10091303 ~ 10092528 (+)
LOC110487893 LOC106570636 coding upstream 149181 10049196 ~ 10064026 (+)
LOC110487884 LOC106570642 coding upstream 588512 9622027 ~ 9624695 (+)
cck-t cck-t coding upstream 639427 9568052 ~ 9573780 (+)
LOC110489367 LOC106570646 coding upstream 680545 9489794 ~ 9532662 (+)
LOC118946540 NA coding downstream 95991 10318805 ~ 10323588 (+)
LOC110513484 LOC106570612 coding downstream 178330 10404372 ~ 10427604 (+)
si:ch211-199g17.9 syce1 coding downstream 211635 10437677 ~ 10441669 (+)
LOC110489372 LOC106570609 coding downstream 240323 10466365 ~ 10490055 (+)
LOC110489373 LOC106570620 coding downstream 281051 10507093 ~ 10509282 (+)
G2294951 NA non-coding upstream 10218 10202780 ~ 10202989 (+)
G2294941 NA non-coding upstream 27292 10170536 ~ 10185915 (+)
G2294931 NA non-coding upstream 45715 10138020 ~ 10167492 (+)
G2294925 NA non-coding upstream 81556 10130116 ~ 10131651 (+)
G2294923 NA non-coding upstream 88891 10124055 ~ 10124316 (+)
G2294962 NA non-coding downstream 3792 10229834 ~ 10250320 (+)
G2294964 NA non-coding downstream 7685 10233727 ~ 10234343 (+)
G2294970 NA non-coding downstream 15552 10241594 ~ 10242212 (+)
G2294991 NA non-coding downstream 53486 10279528 ~ 10279900 (+)
G2294996 NA non-coding downstream 78987 10305029 ~ 10306296 (+)
G2294452 LOC106570648 other upstream 875452 9335335 ~ 9337755 (+)
G2294081 NA other upstream 1110021 9094792 ~ 9103186 (+)
G2293943 LOC106570655 other upstream 1365955 8844013 ~ 8847252 (+)
G2293942 NA other upstream 1417705 8791101 ~ 8876464 (+)
LOC110487904 snrpd1 other downstream 288912 10509464 ~ 10521398 (+)
G2296150 LOC106570575 other downstream 1059451 11285493 ~ 11290303 (+)
G2296278 NA other downstream 1337505 11563547 ~ 11564590 (+)
LOC110487932 LOC106570557 other downstream 1680665 11906205 ~ 11910366 (+)

Expression


Co-expression Network