G2294970


Basic Information

Item Value
gene id G2294970
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 10241594 ~ 10242212 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2625041
CTTATACATCCACAGCAGtggaacattgtgtgtgtgtgtgagggacgcGGTATTCATTTGAGGCTCAAAAGctgtgtgaacgtgtgtgtatgtatgtatgtatatgtgtttaaggtgtgtgtgtatgtatgtatatgtgtttaaggtgtgtgtgtttaaggtgtgtgtgtgtgtgtttaaggtgtgtgtgtctgtgtttaaggtgtgtgtgtgtgtgtttaaggtgtgtgtgtgtgtgtgtttaaggtgtgtgtgtttaaggtgtgtgtgtgtgtgtttaaggtgtgtgtgtgtgtgtttaaggtgtgtgtatatgtttctCCTTACGTTGTGACTGGGACACCATCTTGGTGCGGCTGCGTCCCCGGGAGTCCACGTGGCTGGCACTGGTTGCCGTGGTGAGAGGCTGCTTGGTCCTCAGACGAcctgaggtcagaggtcatactGTTAGACCGGACACTGACTGGACACACACTCTTCTTCTCACACTTTCTGAATAGAACAGAGACCACCCACCCTCCACTACTAAGCAATAAGCACTAGTCTAGAGAAGGTAAGAGAAGTACTACTGGAGAATACTAG

Function

NR:

description
PREDICTED: CLIP-associating protein 2 isoform X27

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2625041 True 582 lncRNA 0.46 2 10241594 10242212

Neighbor

gene id symbol gene type direction distance location
LOC118946535 NA coding upstream 149066 10091303 ~ 10092528 (+)
LOC110487893 LOC106570636 coding upstream 177568 10049196 ~ 10064026 (+)
LOC110487884 LOC106570642 coding upstream 616899 9622027 ~ 9624695 (+)
cck-t cck-t coding upstream 667814 9568052 ~ 9573780 (+)
LOC110489367 LOC106570646 coding upstream 708932 9489794 ~ 9532662 (+)
LOC118946540 NA coding downstream 79821 10318805 ~ 10323588 (+)
LOC110513484 LOC106570612 coding downstream 162160 10404372 ~ 10427604 (+)
si:ch211-199g17.9 syce1 coding downstream 195465 10437677 ~ 10441669 (+)
LOC110489372 LOC106570609 coding downstream 224153 10466365 ~ 10490055 (+)
LOC110489373 LOC106570620 coding downstream 264881 10507093 ~ 10509282 (+)
G2294964 NA non-coding upstream 7251 10233727 ~ 10234343 (+)
G2294958 clasp2 non-coding upstream 15552 10213207 ~ 10226042 (+)
G2294951 NA non-coding upstream 38605 10202780 ~ 10202989 (+)
G2294941 NA non-coding upstream 55679 10170536 ~ 10185915 (+)
G2294931 NA non-coding upstream 74102 10138020 ~ 10167492 (+)
G2294991 NA non-coding downstream 37316 10279528 ~ 10279900 (+)
G2294996 NA non-coding downstream 62817 10305029 ~ 10306296 (+)
G2294998 NA non-coding downstream 69194 10311406 ~ 10344133 (+)
G2295009 NA non-coding downstream 84722 10326934 ~ 10392171 (+)
G2294925 NA other upstream 109943 10130116 ~ 10131651 (+)
G2294452 LOC106570648 other upstream 903839 9335335 ~ 9337755 (+)
G2294081 NA other upstream 1138408 9094792 ~ 9103186 (+)
G2293943 LOC106570655 other upstream 1394342 8844013 ~ 8847252 (+)
G2293942 NA other upstream 1446092 8791101 ~ 8876464 (+)
LOC110487904 snrpd1 other downstream 272742 10509464 ~ 10521398 (+)
G2296150 LOC106570575 other downstream 1043281 11285493 ~ 11290303 (+)
G2296278 NA other downstream 1321335 11563547 ~ 11564590 (+)
LOC110487932 LOC106570557 other downstream 1664495 11906205 ~ 11910366 (+)

Expression


Co-expression Network