G2295078


Basic Information

Item Value
gene id G2295078
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 10522467 ~ 10522809 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2625231
CACCATCGCCTCATTTTTCAGCGTGGTcgtacacaatttctggaagctgaaattGTCCCAATTATTCAattgcctgcatactcaccagacatgtcacccattgagacAGTTTGGAGTGccctggattgacgtgtacaacagcgtcttccagttcccgccaatatccagcaactttgcacagccattgaagagtggaacaacattccacaggccacaattaacagcctgatcaactctatgcgaaggagatgtgtgagcatgaggcaaatagtggtcacaccagatactgactggttttgtgATCCACGctcctttttttaaggtatctgtgaccaaccgatGC

Function

NR:

description
Transposable element Tcb2 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2625231 True 343 lncRNA 0.47 1 10522467 10522809

Neighbor

gene id symbol gene type direction distance location
LOC110487904 snrpd1 coding upstream 1069 10509464 ~ 10521398 (+)
LOC110489373 LOC106570620 coding upstream 13185 10507093 ~ 10509282 (+)
LOC110489372 LOC106570609 coding upstream 32412 10466365 ~ 10490055 (+)
si:ch211-199g17.9 syce1 coding upstream 80798 10437677 ~ 10441669 (+)
LOC110513484 LOC106570612 coding upstream 94863 10404372 ~ 10427604 (+)
LOC110487905 LOC106570604 coding downstream 18847 10541656 ~ 10568730 (+)
btd LOC106570600 coding downstream 55597 10578406 ~ 10586437 (+)
LOC110487909 LOC106570592 coding downstream 143881 10666690 ~ 10669052 (+)
polr1f twistnb coding downstream 147439 10670248 ~ 10675600 (+)
LOC110489377 LOC106588728 coding downstream 236242 10759051 ~ 10809399 (+)
G2295077 NA non-coding upstream 9114 10512886 ~ 10513353 (+)
G2295030 NA non-coding upstream 29987 10430681 ~ 10492480 (+)
G2295080 NA non-coding downstream 1849 10524658 ~ 10525885 (+)
G2295082 NA non-coding downstream 4310 10527119 ~ 10528078 (+)
G2295089 NA non-coding downstream 26331 10549140 ~ 10573417 (+)
G2295090 NA non-coding downstream 27293 10550102 ~ 10575187 (+)
G2295081 NA non-coding downstream 46038 10568847 ~ 10572244 (+)
LOC118946540 NA other upstream 198879 10318805 ~ 10323588 (+)
G2294925 NA other upstream 390816 10130116 ~ 10131651 (+)
G2294452 LOC106570648 other upstream 1184712 9335335 ~ 9337755 (+)
G2294081 NA other upstream 1419281 9094792 ~ 9103186 (+)
G2296150 LOC106570575 other downstream 762684 11285493 ~ 11290303 (+)
G2296278 NA other downstream 1040738 11563547 ~ 11564590 (+)
LOC110487932 LOC106570557 other downstream 1383898 11906205 ~ 11910366 (+)
G2296450 NA other downstream 1392387 11915196 ~ 11977297 (+)
G2298390 NA other downstream 3107253 13630062 ~ 13630795 (+)

Expression


Co-expression Network