G2295081


Basic Information

Item Value
gene id G2295081
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 10568847 ~ 10572244 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2625245
ccattttggatcttGTCCAGAACTGATGGGGAGGAATCTGGAAGGGGAAGTCAATATGATGGATACCTGGGGATTGTGGGGGAGCATAGCCAGCCCAGTCGATGGTCAACTCCTTCAAAGATTCGAAGGAAGGGTGTGAAAGTGACATTGCTATGGCTGCATCCTGTCACAAAGGGTGCCCTTCCACACATCCTGTCACAAAGGGTGCCCTTCCACACATCCTGTCACAAAGGGTGCACTTCCACACATCCTGTCACAAAGGGTGCACTTCCACACATCCTGTCATGGACTTAAAAACAATGGATTGTGTAAACTGGAGGGAGTTTCCACTATTGTTAATTGTTGGAATAACCCTGGAGAGAGATGTTGACTGTTGACTTGTGGTCTCAGTGGGAATGTGAGACAGAGGTTAGTGTGGTCTCAGTGAGGATTCCCCAGAGGGGATGTGAGACAGAGGTTAATGTGGTCTCAGTGAGGATGTGAGGCAGAGGTTAATGTGGTCTCAGTGAGGATGTGAGGCAGAGGTTAATGTGGTCTCAGTGAGGATGTGAGACAGAGGTTAATGTGGTCTCAGTGGGGATGTGAGACAGAGGTTAATGTGGTCTCAGTGAGGATGTGAGACAGAGGTTAATGTGGTCTCAGTGAGGATGTGAGACAGAGGTTAATGTGGTCTCAGTGAGGATGTGAGGCAGAGGTTAATGTGGTCTCAGTGAGGATGTGAGGCAGAGGTTAATGTGGTCTCAGTGAGGATGTGAGGCAGAGGCTAATGTGGTCTCAGTGAGGATGTGAGACAGAGGTTAATGTGGTCTCAGTGGGGATGTGAGACAGAGGTTAATGTGGTCTCAGTGAGGATGTGAGACAGAGGTTAATGTGGTCTCAGTGAGGATGTGAGACAGAGGTTAATGTGGTCTCAGTGAGGATTCCCCAGAGGGGATGTGAGACAGAGGTTAATGTGGTCTCAGTGAGGATGTGAGACAGAGGTTAATGTGGTCTCAGTGGGGATGTGAGACAGAGGTTAATGTGGGCTCAGTGAGGATTCCCCAGAGGGGATGTGAGACAGAGGTTAATGTGGTCTCAGTGAGGATGTGAGACAGAGGTTAATGTGGTCTCAGTGGGGATGTGAGACAGAGGTTAATGTGGTCTCAGTGAGGATGTGAGACAGAGGTTAATGTGGTCTCAGTGAGGATTCCCCAGAGGGGATGTGAGACAGAGGTTAATGTGGTCTCAGTGAGGATGTGAGACAGAGGTTAATGTGGTCTCAGTGAGGATGTGAGGCAGAGGTTAATGTGGTCTCAGTGAGGATGTGAGACAGAGGTTAATGTGGTCTCAGTGGGGATGTGAGGCAGAGGTTAATGTGGTCTCAGTGAGGATTCCCCAGAGGGGATGTGAGACAGAAGTTAATGTGGTCTCAGTGAGGATTCCCCAGAGGGGATGTGAGACAGAGGTTAATGTGGTCTCAGTGAGGATGTGAGACAGAGGTTAGTGTGGTCTCAGTGAGGATGTGAGGCAGAGGTTAATGTGGTCTCAGTGAGGATGTGAGGCAGAGGTTAATGTGGTCTCAGTGAGGATTCCCCAGAGGGAACAACAGAAGGACAGACACACTGTGACATCACACCACTGAACCCTAGACTTATGATCCCTGATCCCACAGCACGTGTGGTTCCTCAATTAAAAGTTTCAAGTTTATGCCAAAACcgtttgtggtagatggtggcagattgtggtaaattgcatcattctgtcattgcaccacactatcacaagggggagttagagagcTGAATTtgatttctctccctctaaaaacagatagaaatcattctaaataacaaactgtctTTATTTACCACAGTGTGAAAGGCTGATAGCCCGTCTATATAGAGTTTCTGAAACACAGAGTCCTTCTTTGCTGATGTGAAGAAGAAACTGAATGAAAGAGAGTCCAGTGAGGATCGGGAGGGAAAAAGGTTTCCCAAGTCCTGAGCTAGTTTTTttattaacccttattttaccaggtaagttgactgagaacacattctcatttacagaaaCGACCTGGGGaacagttacaggggagaggaagggagggatcaATGAGCACATTTTAAGggacgttctcttgataagtgtgtgaattggaccattttcctgttcaaatgtaacaagtacttttgggtatcaggtagtaaaaagtacattattttctttaggaatgtagcgaagtagaagtaaaagttggcaaaaaatataaattgtgAAAGTACAATAAAACGA

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2625245 True 2274 lncRNA 0.46 2 10568847 10572244

Neighbor

gene id symbol gene type direction distance location
LOC110487905 LOC106570604 coding upstream 117 10541656 ~ 10568730 (+)
LOC110487904 snrpd1 coding upstream 47449 10509464 ~ 10521398 (+)
LOC110489373 LOC106570620 coding upstream 59565 10507093 ~ 10509282 (+)
LOC110489372 LOC106570609 coding upstream 78792 10466365 ~ 10490055 (+)
si:ch211-199g17.9 syce1 coding upstream 127178 10437677 ~ 10441669 (+)
btd LOC106570600 coding downstream 6162 10578406 ~ 10586437 (+)
LOC110487909 LOC106570592 coding downstream 94446 10666690 ~ 10669052 (+)
polr1f twistnb coding downstream 98004 10670248 ~ 10675600 (+)
LOC110489377 LOC106588728 coding downstream 186807 10759051 ~ 10809399 (+)
il6 il-6 coding downstream 429804 11002048 ~ 11004436 (+)
G2295082 NA non-coding upstream 40769 10527119 ~ 10528078 (+)
G2295080 NA non-coding upstream 42962 10524658 ~ 10525885 (+)
G2295078 NA non-coding upstream 46038 10522467 ~ 10522809 (+)
G2295077 NA non-coding upstream 55494 10512886 ~ 10513353 (+)
G2295101 LOC106570616 non-coding downstream 23190 10595434 ~ 10598111 (+)
G2295139 NA non-coding downstream 76559 10648803 ~ 10695787 (+)
G2295147 NA non-coding downstream 90387 10662631 ~ 10663333 (+)
G2295152 NA non-coding downstream 97185 10669429 ~ 10669848 (+)
G2295163 NA non-coding downstream 133518 10705762 ~ 10706065 (+)
LOC118946540 NA other upstream 245259 10318805 ~ 10323588 (+)
G2294925 NA other upstream 437196 10130116 ~ 10131651 (+)
G2294452 LOC106570648 other upstream 1231092 9335335 ~ 9337755 (+)
G2294081 NA other upstream 1465661 9094792 ~ 9103186 (+)
G2296150 LOC106570575 other downstream 713249 11285493 ~ 11290303 (+)
G2296278 NA other downstream 991303 11563547 ~ 11564590 (+)
LOC110487932 LOC106570557 other downstream 1334463 11906205 ~ 11910366 (+)
G2296450 NA other downstream 1342952 11915196 ~ 11977297 (+)
G2298390 NA other downstream 3057818 13630062 ~ 13630795 (+)

Expression


Co-expression Network