G2295813 (LOC106570580)


Basic Information

Item Value
gene id G2295813
gene name LOC106570580
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 11009175 ~ 11012661 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2626201
TGAGTTATCTTCAGACAGAAAATCCCAAACAATTGAAGTCCATCAATATGTACAGATTCATGACATACTATAAAACAGAATACAGAAACATGATTGTTATTGTTCCACCATATGAATATAAAACAGATCTAGAACACTGACGGACAGAACTCTGGGACTGATAGAACACTGGTTCTAGAACACAAAGGTTCCAGAGGGGCAGACTTTATTCTGCATTCAGATCTCCAGTAGGAAACAGTGTTCTGTCTGATCTACGGAGTCCtaatcatagaaatagaatgaatagaacagatgtcaccattcaagtcaatgatggcaaaATGGATGGACTAGTGGCCATTGCAAGTGTACCCATATGTGCAAAGCatgaagtaaaagcaggaagtgtaaacatcaatatgtgctgtgatttgtttaaactcaactgacattacaaaaaaatacatttcattgcATGAGCCACATAGTTAACAATTtaaatgaacattctacattacttTGAAAAATATTGCGttacaataccaggcagccattgcaaGTGTATCCATGAATTTACCAgccaaattgccagggttagagcttCCAAGTCTTTTcaattcattctatttctatgctccCAAAACTTCTCTCAATCTTTACCGCAGTGAACTTTATTGCCACCAAAATGGAGAAGAATGTGACTTTGACTTTGTTCTGCTAGTCAGCAGTACACCTCTCCTCAAGGGTGTTATTTGTGTGTATTACATTATAAAGCAGGTTATGATAGACCAGAGAACAAATCAATTAAAAGACCAATCAATCAATAAAGATCAACCCTAGCTTGAATAGGCCTACTCCAAATTCCCTAGCCAGTCCTCTAACGCCCCTATAGCCGCCCCCTATAGCCACTCCTCCCTAGCCGCCCCTATAGCCGCTCCTCCCTAGCCCCTATAGCCGCTCCTCCCTAGCCCCTATTGCAGCTCCTCCCTAACCGCTCCTCCCTAGCAGCTATAGCCACTCCTCCCTAGCCCCTATAGCAGCTCCTCCCTAGCTGCCCCTATAGCCTCTCCTCCTACGCCCCTATAGCCACTCCTCCTACGCCCCTATAGCCACTCCTCCTACGCCCCTATATCTGCTCCTTCCTAGCCGCCCCTATAACCGCTCCTCCCTAGCACCTATAGCCCCTCCTCCCTAGCCGCCCCTATAGCTACTCCTCCTACGCCCCTATAGCCACTCCTCCTAAGCCCAGGGTATGTTTGGGATGGTGGTCGTGCAGGGTTGGGTCTTCTTGTGCTTTAACACTGAAGGGATTCAACACTGCTAAAACAACAACTATCTGTCTCGTAGGAAAATGCCACATTTATAACCGGACTTGGTCTGCTGTACATAGAACACCACAGTTAAAAGGTCGACTCTGCAATATGACATCAGCATACACGGTGGGGTGACTTCCTGCTACTACATAAGCTGAATCACTCCCTTCATTTGAGTGTTCACACATGCCTCTGCCATACTGTATGCACAAGTGTCCCAAAGCTGAGGGAGTGAAAATTAATCAAGGGGGTAGGGGCTAATTAGACCCTCGGAGAGCCACGTTGGCCAAGCCAGCAAGGCTGCAGTGCGAAGTGCTATCCCGACACACACCATGATATGTTTGCAATTTGAGCGGCGTGCCCAATTATAAGTCCCTTTGCAGTTGTTTGTTTGCCTGATTTGACACATGTAACAGATGAAAAACCTCACAAATGAAACATTGAACTGTTACTGAGGTTTATACATCTTTTAAAACAACAGGGGGATTTGTTCATTTAAAATGTCATGCTCATTTTATTATTTAAAATGTGGACCATGAATTACGTCGGTCAAGCCACGAGCGTGTCCCAAAGTCGATGGGTTCAGGGATCCCTCGCCATTCTCTGGACGTCACCCTCGCCACTCTTTTGAAAGCAACATGTGACAAACGGAGGGTCCTCCAAGCGAGTTGGCTGGGGTGAGGGTTTGGGATCCACCGTTACACTTGATGGTGGTGTCATATTGCAGAGTGTATCTTTACAAAAACCCTAGTCTCTCTCTTCGTCATTGGAACATACCACAGTTTACAAGAACAGTTCATACATCATCAAAACAAATCCACCCCAATCAACTTATTGATCTGAAACACACAAACCCCAATAAGCTTGTTTATTGATGAGATCAGTGAGAAAATATTGCTTCTAATAGGATAACATCAATCAATAGTATTCAGACATTTACAACATTcatcatttgggggggggggggttctacaaTTTAGCAATCTGTCGTTTAATCGTTTCGTGGGATGCTATGGCAACAGGAGTGTGAACTTGGCGTTGTGTTGGGGTTGTTCAAACCCTAGTGCATGATGGGTAGGAGTACAGGATTACCATTGGGGTGCAGAGTGGAAGGGGTTGGGGGCTCTAAACTCTCCTattcattctcacacacacacacacacacacacacacacacaatggtcaGGAGGGATGTATGGAAAGTCAAGCAGGACAAacaggagttttttttttaaatactcaaTTTCCAAACCTTTTACAAAAACAGTTGTAGTGAGTCACTCTGTCCAGTCTGCAGTTCTGTCTAGTTACCACCAGGGGGGGTGGTTCAGTAACTCCAGGGATGAGGGCTGGACCCAGGGTCCCGGCTCTCTCACACCAGGCTCTTGCtttggggagagaggagggggaggagaggagccgGCCTTTGGAGGTGGGAAGCTGTCCTACTGGAGAAGAAGAGGTGGGGGAGATGAAGAATGGTGTGGAGAGGAAAGAAGGGAGGGCATGTGTTAATGAGTTTGGGTTCCAGTCCCACTGGCAGGCTGGGAGTCCAGATCAAAAGGCATGGGGTTAGAGGGTTTAGGTGGGTGGTGAGAAGTCAAGGGTTAAATATCAGGGTTCACAGGTCACTCCTAAAGTGCACCCTGATGCTTGGCGAGCGCTGGGTGTGGGAGGGGCTTATATAGCCTAGCTCCTCCTCCTGTAGACTGCCACTGCATGAATAGCGGCCAGCCTCTGGGTTACCACGATGACCTCCAGTGTTGTTTCCTTCGAAGGAGCGGGAGAACACGGCGCTGGCTGTACGCGATAGGCTGCTCAGAGCGCTATGGGTCGGCCCCTTGGGCACCGATTGGCTGGACGTCAGCGTCAGACGTTTGATTGACAGATCCAGGTTCTCGATCAAAGCCTTCCCCCCTGGAGTACAAGTCTCCTTCTCCTTATGCGACCGTCCACCTAAATGCCACTTCCTGCTTCCTGTCTTGGTCCCTCCCACCCCAGGGGTGATACTGTTGCTGATAGTGATGGTGGGCGGAGTCAGGTAGTCCGGGCCGGACCCTCTTTTAGGacacaccccttcatccacttcCGAGATATCCATCAACTCGTCCGGG

Function

NR:

description
PREDICTED: hyccin-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2626201 True 3406 lncRNA 0.47 2 11009175 11012661

Neighbor

gene id symbol gene type direction distance location
il6 il-6 coding upstream 4739 11002048 ~ 11004436 (+)
LOC110489377 LOC106588728 coding upstream 199776 10759051 ~ 10809399 (+)
polr1f twistnb coding upstream 333575 10670248 ~ 10675600 (+)
LOC110487909 LOC106570592 coding upstream 340123 10666690 ~ 10669052 (+)
btd LOC106570600 coding upstream 422738 10578406 ~ 10586437 (+)
LOC110487935 LOC106570554 coding downstream 180389 11193050 ~ 11234468 (+)
LOC118946500 LOC106570575 coding downstream 250871 11262547 ~ 11278404 (+)
LOC110487925 LOC106570566 coding downstream 540688 11553349 ~ 11656524 (+)
LOC110487927 LOC106588816 coding downstream 651339 11664000 ~ 11742813 (+)
LOC110487931 LOC106570561 coding downstream 802446 11815107 ~ 11841142 (+)
G2295811 NA non-coding upstream 3188 10978353 ~ 11005987 (+)
G2295799 NA non-coding upstream 52810 10956157 ~ 10956365 (+)
G2295760 NA non-coding upstream 109250 10891529 ~ 10899925 (+)
G2295704 NA non-coding upstream 118094 10834355 ~ 10891081 (+)
G2295826 NA non-coding downstream 4782 11017443 ~ 11060069 (+)
G2295849 NA non-coding downstream 35860 11048521 ~ 11049277 (+)
G2295859 NA non-coding downstream 46752 11059413 ~ 11079190 (+)
G2295866 NA non-coding downstream 55623 11068284 ~ 11090111 (+)
G2296030 NA non-coding downstream 82572 11095233 ~ 11095444 (+)
LOC110487904 snrpd1 other upstream 487868 10509464 ~ 10521398 (+)
LOC118946540 NA other upstream 685587 10318805 ~ 10323588 (+)
G2294925 NA other upstream 877524 10130116 ~ 10131651 (+)
G2294452 LOC106570648 other upstream 1671420 9335335 ~ 9337755 (+)
G2294081 NA other upstream 1905989 9094792 ~ 9103186 (+)
G2296150 LOC106570575 other downstream 272832 11285493 ~ 11290303 (+)
G2296278 NA other downstream 550886 11563547 ~ 11564590 (+)
LOC110487932 LOC106570557 other downstream 894046 11906205 ~ 11910366 (+)
G2296450 NA other downstream 902535 11915196 ~ 11977297 (+)
G2298390 NA other downstream 2617401 13630062 ~ 13630795 (+)

Expression


Co-expression Network