G2295859


Basic Information

Item Value
gene id G2295859
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 11059413 ~ 11079190 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2626249
CGCTAAGCAACTCCACCGCTTCAGGACTGAGAACAGGCGACTGACTCCGCAAACGCAGGATGACTGTCAGAAAATGGAGGACCCCGTGAAGTCTCCGTTCACTCAAGGGGAGGAGTATCTGAACATCGCCAACTCTCATTCACCGAAACAGATGAACAACTGCCCCGCCCACTCCTGACCACACCCCTAACGCAAACGAGGAGagaatttggcagtacgtccaaccgacctcacaactgcagaccacgtgtaaccatgccaacccaggacctccacatccggcttcttcacctcagaccacgtgtaaccacgccaacccaggacctccacatccggcttcttcacctcagaccacgtgtaaccacgccaacccaggacctccacatccggcttcttcacctgtggtaTTGTCTGAGACctgccacccagacagctgaggaatctgaagagtatttctgtctgtaataaagccttttaCTGGTCAAAAATGTATTCTGATTGGCTAGAACTGGCTTCCCAGTGGGTGTGGCTATGCCCTCCTagtcccacccatggctgcacccctgtctggtcatgtgaaatccatagattagagcctaat
>TU2626250
CGCTAAGCAACTCCACCGCTTCAGGACTGAGAACAGGCGACTGACTCCGCAAACGCAGGATGACTGTCAGAAAATGGAGGACCCCGTGAAGTCTCCGTTCACTCAAGGGGAGGAGTATCTGAACATCGCCAACTCTCATTCACCGAAACAGATGAACAACTGCCCCGCCCACTCCTGACCACACCCCTAACGCAAACGAGGAGagaatttggcagtacgtccaaccgacctcacaactgcagaccacgtgtaaccatgccaacccaggacctccacatccggcttcttcacctcagaccacgtgtaaccacgccaacccaggacctccacatccggcttcttcacctgtggtaTTGTCTGAGACctgccacccagacagctgaggaatctgaagagtatttctgtctgtaataaagccttttaCTGGTCAAAAATGTATTCTGATTGGCTAGAACTGGCTTCCCAGTGGGTGTGGCTATGCCCTCCTagtcccacccatggctgcacccctgtctggtcatgtgaaatccatagattagagcctaat

Function

NR:

description
chondroitin sulfate proteoglycan 5-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2626249 False 601 lncRNA 0.53 4 11059413 11079190
TU2626250 True 547 lncRNA 0.53 4 11059413 11079190

Neighbor

gene id symbol gene type direction distance location
il6 il-6 coding upstream 54977 11002048 ~ 11004436 (+)
LOC110489377 LOC106588728 coding upstream 250014 10759051 ~ 10809399 (+)
polr1f twistnb coding upstream 383813 10670248 ~ 10675600 (+)
LOC110487909 LOC106570592 coding upstream 390361 10666690 ~ 10669052 (+)
btd LOC106570600 coding upstream 472976 10578406 ~ 10586437 (+)
LOC110487935 LOC106570554 coding downstream 113860 11193050 ~ 11234468 (+)
LOC118946500 LOC106570575 coding downstream 184342 11262547 ~ 11278404 (+)
LOC110487925 LOC106570566 coding downstream 474159 11553349 ~ 11656524 (+)
LOC110487927 LOC106588816 coding downstream 584810 11664000 ~ 11742813 (+)
LOC110487931 LOC106570561 coding downstream 735917 11815107 ~ 11841142 (+)
G2295849 NA non-coding upstream 10136 11048521 ~ 11049277 (+)
G2295813 LOC106570580 non-coding upstream 46752 11009175 ~ 11012661 (+)
G2295811 NA non-coding upstream 53426 10978353 ~ 11005987 (+)
G2295799 NA non-coding upstream 103048 10956157 ~ 10956365 (+)
G2295760 NA non-coding upstream 159488 10891529 ~ 10899925 (+)
G2296030 NA non-coding downstream 16043 11095233 ~ 11095444 (+)
G2296035 NA non-coding downstream 24517 11103707 ~ 11106272 (+)
G2296048 NA non-coding downstream 45032 11124222 ~ 11129511 (+)
G2296049 NA non-coding downstream 45921 11125111 ~ 11127387 (+)
G2296050 NA non-coding downstream 47013 11126203 ~ 11127826 (+)
LOC110487904 snrpd1 other upstream 538106 10509464 ~ 10521398 (+)
LOC118946540 NA other upstream 735825 10318805 ~ 10323588 (+)
G2294925 NA other upstream 927762 10130116 ~ 10131651 (+)
G2294452 LOC106570648 other upstream 1721658 9335335 ~ 9337755 (+)
G2294081 NA other upstream 1956227 9094792 ~ 9103186 (+)
G2296150 LOC106570575 other downstream 206303 11285493 ~ 11290303 (+)
G2296278 NA other downstream 484357 11563547 ~ 11564590 (+)
LOC110487932 LOC106570557 other downstream 827517 11906205 ~ 11910366 (+)
G2296450 NA other downstream 836006 11915196 ~ 11977297 (+)
G2298390 NA other downstream 2550872 13630062 ~ 13630795 (+)

Expression


Co-expression Network