G2296035


Basic Information

Item Value
gene id G2296035
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 11103707 ~ 11106272 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2626467
cTCTCAACAAACCTGTAGAAAATACGTATATAACACGTTACAGTATATAATCCTAACTCCTTAAAATCCACACTCTGTAAAATGTGCATATCATCAAAGAGTGGGCcaccaacaaaaacataaacaacagATAAAATGCATCCCGTGACATTTCCACATGCAAATAGTTCTGGATTCTAGATGCAATGTATAAGCAGTGCTGAAGGAATGAGGCACGAGAGCAACATGATTTCAAATTGAGGCTAAACTGACCGATTTAGTTCTGGGTTTCAACCCTCCTCATTAGGAAATGAGACTGAGAACGAGATTTGGGTCTTGGAGGAGTTCATTGATGCGGGTGTctcttgtgtgtgcgtgtgcttgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtttcttgtgaTATGCTTTGGATGTGCTTATCAATACACAATCAACTTTTGTCCCACCCATATCAATAAACAAATTGTATCACAGTCATGCAAATGTTTTACTGTGCGTGAGCTTTCAAATGCATCCTGTCATCTCTAAATGTGTAACACGATAGGTCTTTTAATATGACACATTTCAACCCAAAACATTTCATTCATAAAATAATTCATCAGACGTCCTCCTGAAGGGGATGATGACTTAATCTTTGCGAGAGGGAGGTAACCTAATATCATTGGTCCTCGACTCGCATATCAGTCGTTTCATTCAGGGTAAGTGGAGTTAGCCGTGAGTTAGCCTGCCCCAGAGCAGGTTCATTCTGAAGGATTCGTTGCCATAGAAATTTACCTGGCTAAACCGTGAGCCACTTTCATAGGACCGGTTATCCAGAGTTAaactcagagttgaccaaagttgCCTCTCTAACTCCTTAAACCTGATTCGTAGTATAGGGCTCAGGTTGTATTCCTTCGGCTGGTGTGCGACCCGTGGAGAAGTTGGTTTAACTTTTGATAGCCTATCtctggggctagttagggacctcAAAAAATGACACAATATAAATGGtacaatattttcatgttgcacatCTTTTAGTTCTCTTTACATTCTTTCAAAATGTGTATAttaatttctacaatttatagttggGTTTGAGGTTTTTAAGTAACGTACATTTGGAGCTATTGAAATGTTTTCACATTGTCCAAAAAATattgtacattgtgtaatttattgatgGTCCCTATCTAGACCCATAGTGATATCCAAAGTCTCCTGTGCTCAGAATTGATGATTACTTGGGTGTTGCCAgctgtgggcaggattgaaatGAACTCAACCCAAGGAAAACTGTCACGTTACCTAGATTCCTTACATTTCACCAATCTTTCTTTTGGACGgtactgactttatgaccaaaattaccctttttacactttgtagtcaatttagactcaataacaaatgtttctgactcatattgatGCTACAGGGGTCGTTATCAACCGGAGAAGTTGGTTGTTTGGTTCAGTCGCTCTTTAAACATGATTTGAAGCTACACATGATTTGTTTACAAAGTCTCCTATGTTACCATAACCCTAAACTATGGACTAATAGGCCCTTATGGTTATGATAAGTACAACTCTTACTAAACTTCAATTagcctatactgtatgtaatattgTTAAACAATATTGAAAGTCACCtttaaaaggtgtgtgtgtgtgtgtgtgtgtgtgtgttaaacccaTTAGGCCAGCATGCAGTAATACATTATGTAGTGAAACCACCAGATTAAACTACTATTCTGGGCTACACTactgtatgcagtgtgtgtgtgtgtttatcatttgtgtgtgcatgtttctaatgggtgtgtgtgtgtttataatggctgtgtgtatttataatgtgtgtgtgtgtgtttataatggctgtgtgtgtgtgtatatgtgtgtatgcatgattATAAAGGgggtgtgtgtatttataatgtgtgtgtgtgtgtgtttataatagtgtgtgggtgtgtgtgtgtgtttataatactgtgtgtgtgtgtgtgtgtgtgtgtttataatggGTGTGTGTTTGGTTATttcaaagggtgtgtgtgtgcttataatgggtttGTGTGTGTTTATAATGGGTGtgtaatgggtgtgtgtgtgtttataatgggtgtgtttgtgtgatcaGGGACTGAAGGGTCTGGTAGATTCGTCATAGTCAGACAGACATTTTGGATGGATTCCTTTTGCGTTGTAGTAATCCACCACCTGATTGGGCACCTCTGCTAACACACTCTTAGCAAGCGCAGCCGGG

Function

NR:

description
copine-4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2626467 True 2256 lncRNA 0.39 4 11103707 11106272

Neighbor

gene id symbol gene type direction distance location
il6 il-6 coding upstream 99271 11002048 ~ 11004436 (+)
LOC110489377 LOC106588728 coding upstream 294308 10759051 ~ 10809399 (+)
polr1f twistnb coding upstream 428107 10670248 ~ 10675600 (+)
LOC110487909 LOC106570592 coding upstream 434655 10666690 ~ 10669052 (+)
btd LOC106570600 coding upstream 517270 10578406 ~ 10586437 (+)
LOC110487935 LOC106570554 coding downstream 86778 11193050 ~ 11234468 (+)
LOC118946500 LOC106570575 coding downstream 157260 11262547 ~ 11278404 (+)
LOC110487925 LOC106570566 coding downstream 447077 11553349 ~ 11656524 (+)
LOC110487927 LOC106588816 coding downstream 557728 11664000 ~ 11742813 (+)
LOC110487931 LOC106570561 coding downstream 708835 11815107 ~ 11841142 (+)
G2296030 NA non-coding upstream 8263 11095233 ~ 11095444 (+)
G2295866 NA non-coding upstream 13596 11068284 ~ 11090111 (+)
G2295859 NA non-coding upstream 24517 11059413 ~ 11079190 (+)
G2295826 NA non-coding upstream 43638 11017443 ~ 11060069 (+)
G2295849 NA non-coding upstream 54430 11048521 ~ 11049277 (+)
G2296048 NA non-coding downstream 17950 11124222 ~ 11129511 (+)
G2296049 NA non-coding downstream 18839 11125111 ~ 11127387 (+)
G2296050 NA non-coding downstream 19931 11126203 ~ 11127826 (+)
G2296052 NA non-coding downstream 23466 11129738 ~ 11130457 (+)
G2296064 NA non-coding downstream 44939 11151211 ~ 11151682 (+)
LOC110487904 snrpd1 other upstream 582400 10509464 ~ 10521398 (+)
LOC118946540 NA other upstream 780119 10318805 ~ 10323588 (+)
G2294925 NA other upstream 972056 10130116 ~ 10131651 (+)
G2294452 LOC106570648 other upstream 1765952 9335335 ~ 9337755 (+)
G2294081 NA other upstream 2000521 9094792 ~ 9103186 (+)
G2296150 LOC106570575 other downstream 179221 11285493 ~ 11290303 (+)
G2296278 NA other downstream 457275 11563547 ~ 11564590 (+)
LOC110487932 LOC106570557 other downstream 800435 11906205 ~ 11910366 (+)
G2296450 NA other downstream 808924 11915196 ~ 11977297 (+)
G2298390 NA other downstream 2523790 13630062 ~ 13630795 (+)

Expression


Co-expression Network