G2296150 (LOC106570575)


Basic Information

Item Value
gene id G2296150
gene name LOC106570575
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 11285493 ~ 11290303 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2626619
CACCCACAGAGAACTGTACGATGGCAAAGTTGGGCGTGTGGCTGTCGTCGATGCGTTCCACGGTGGACGAGTCTATCTTCAGCTCGCTGCTGATCTCAGCGCTCTGGATAAAGTCCTCCGTCTTCAGGTCCTCCACGCGCTTCAGCTCCCCGTCCGCCAGCTGGATGATGGAGCCCTTGATAAAGTAGGCGGGCAGCGAGGAGCCCGAGGGGGCCGAGGAGGGGGCCTGGGGGGTTGGGACCACCGGGAGGTGTAGCTGGGCCTGGACCATGCTCCCCCCAGCCCCAGCAGGGTAGGACAGAGGAGGGTAGGGGGCCGGGACCTCAAATAGATGCTCCTCTCTGgggttagtggtggtggtggtggtggcaacGTAGGCGTGGGAGAGTGTGGCAGGGAAGGGCTGTGGTTGACTTGTGGTGGCTATGTGTGCAGTATGGCCAGCCTCCAGGCTGGTGGCCCCGGCCCCACTGACGGGGATGAGCAGGTGCTGGGACAGACTGGTGTGGTACTGTTGCCCCCCCGCACCCCCAGACAGATAGCCGATGATGGGCTGCCCACCTGGGCCAGCCTGGTAGAAGTTGGTGGAGAGTTGGCCTAAGGAGATGGGCGATGCATCGCTGGCGTTGTGTGTGGGCTGGATGACTGTGTGAGTGTGGGGGGACAGGGAGCTGACGGCTGCCTTAAGACTCTCCACATTGAGCGCAGGGGGGAAGGTGAacgtggaggaggaggtgcgGTACACAGGTTTACCCAGGAGGAGGCTGCCTTTCTCTGGGTGCAaggcagaggagaggggtagTTTTTCGGGACTCTGGTGGTCTTGTCCTCCATGACTGTTGGGGACGAGCATGAGAGAGGTCCGTAGCCCTGAGGCATCATGGGAGGTATAGGTCTCATAGTGATGGTGGGAGCTCTGCTGCTGGTGGAGCTGGTgatgggagaaagaggaggaagaagaggaggatgatgatggggCTCCTTTGCTTTCCTTCCTCTCAAAGCGGCCTCTCTTCTCCAGCTCTCCGTTGTGCAGTTCCCTGGGCCGGCCCTCCTCTCTCTTAGTCAGGGGCTCCTCGGAGCCCGCATACTGTACCAGCACCTGGGAGCCCCCGCTGAGGGTGTGGTGGGGGTCGTGGTGCAGGTGGTGGGTCCCTCCGTGGGGCAAGGGGGCAGTCCGGGGGGCCACGTTCTGAGAGGAACCAGAGAGCTGGACGTACTGGGGGCCAGTGTCCGATAGAGCCAGGCCTGGGGGTAGGGACTGGGGTGGGGGGCGACCTGGACCCACAGAGTGGTGCTGGTTCAGCTTGGAGGTGATGGTGGCGTTGGGGTAGGGGTCAGGGTGGGAGCGTTGGGATGTGGAGGTGGGTAGAGGGGGGGGCTGGGAGGAGAGGTAGCCTGGGTAAGGGGAACTGATGACCTGAAGGTTGTGGGGAAGCTGGGTGTAGTGGATGGTCCCCCCTGGTGGGGACAGAGGAGAGCTGTACATGGCAGGGAGCGATGTGGTCACCACTCTGGACTGatgtgatgaagaggaggaacagATGGAGGAAGGGACCAGGAAGTCTGAGTGTGTGGGGATGGTGGAGCATAGTGGTTTGTACTGGGGCACGTCAGACTCACAGGGAGTGCTGGTACGCTGCCCACCTCTACCGCCATCCCCGTTACCTCCACTAATGTCTCTGTTGTGCCCGCCAGCTACACTGGCCAGCCATGTCAGGTTCTCTCCTCGCTGGGTCTCGCTGGCGGGCGCCATCAACAGGGGCCTCTCATCTGCAGTGCTGGCTGGGAAATCTCTCTTCTTGGGGGGCAGACACTCGTTGCTGCGCTCATGGTTGGACTTCATACTGTTGTCTTTTCTCTCTAGACTTTCTGTCACATAGACACGCGTTGCTCCCACGGCAACAACAGGTGTGCCTGTCTCTCTTTTCACACTAACTATCTAGTTCTTATGTCTCTGCCTCGTTCACATTCTCTTTCATTCCTGtctttggctctctctctctctctctctctctctctctctctccctctctct

Function

NR:

description
ataxin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2626619 True 2038 TUCP 0.60 2 11285493 11290303

Neighbor

gene id symbol gene type direction distance location
LOC118946500 LOC106570575 coding upstream 20627 11262547 ~ 11278404 (+)
LOC110487935 LOC106570554 coding upstream 51025 11193050 ~ 11234468 (+)
il6 il-6 coding upstream 281057 11002048 ~ 11004436 (+)
LOC110489377 LOC106588728 coding upstream 476094 10759051 ~ 10809399 (+)
polr1f twistnb coding upstream 609893 10670248 ~ 10675600 (+)
LOC110487925 LOC106570566 coding downstream 263046 11553349 ~ 11656524 (+)
LOC110487927 LOC106588816 coding downstream 373697 11664000 ~ 11742813 (+)
LOC110487931 LOC106570561 coding downstream 524804 11815107 ~ 11841142 (+)
LOC110487932 LOC106570557 coding downstream 615902 11906205 ~ 11910366 (+)
LOC110487934 LOC106570559 coding downstream 641255 11931558 ~ 11959079 (+)
G2296143 NA non-coding upstream 38077 11247083 ~ 11247416 (+)
G2296142 NA non-coding upstream 39675 11245613 ~ 11245818 (+)
G2296139 NA non-coding upstream 49086 11235687 ~ 11236407 (+)
G2296114 NA non-coding upstream 100396 11184808 ~ 11185097 (+)
G2296178 NA non-coding downstream 42270 11332573 ~ 11387113 (+)
G2296204 NA non-coding downstream 101883 11392186 ~ 11392574 (+)
G2296205 NA non-coding downstream 103509 11393812 ~ 11394057 (+)
G2296230 NA non-coding downstream 143124 11433427 ~ 11435423 (+)
G2296241 NA non-coding downstream 166695 11456998 ~ 11457422 (+)
LOC110487904 snrpd1 other upstream 764186 10509464 ~ 10521398 (+)
LOC118946540 NA other upstream 961905 10318805 ~ 10323588 (+)
G2294925 NA other upstream 1153842 10130116 ~ 10131651 (+)
G2294452 LOC106570648 other upstream 1947738 9335335 ~ 9337755 (+)
G2294081 NA other upstream 2182307 9094792 ~ 9103186 (+)
G2296278 NA other downstream 273244 11563547 ~ 11564590 (+)
G2296450 NA other downstream 624893 11915196 ~ 11977297 (+)
G2298390 NA other downstream 2339759 13630062 ~ 13630795 (+)
G2298739 NA other downstream 2462964 13753267 ~ 13753517 (+)

Expression


Co-expression Network