G2296282 (mrpl53)


Basic Information

Item Value
gene id G2296282
gene name mrpl53
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 11545314 ~ 11548620 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2626766
GGGACTACTTCTTGGCTGTAATTTTGGCCTGGGGGTCCTTGGCCACACATCGGGACTGCAGTGCAGTCAGCATCTCCTTGCTGGTCAGTCTCGCTCCCTTCATCATTAGTCTTTCTCCATCCATGAATGTGATGTCCACCACTGGTTCAGACTGGTCGTGTTTAACTTCTGTCATCACCTCACAGTTCATATTTGTCGATCTGGCCTTCTCAGACCCAACCAGGACCAGGAACTCCCGTGTGGAACGAACATTGGATTCAAACGGACAAAACTGAACAACAATGTTCTTGACCGTCTTAAGCACCACCGTTGTCTTGCTTGAAGCCGCCATGTTTTCGCAACGATGACCTTTCAACCCGGGCGATGTTCAAGAACATCTCGAGTGCAGATTCGACAGAGTGAATATATTTTTTGATCTGTTCTCGTTCATTTATTTACCACCCAGAGTACATCTAC
>TU2626767
GGGACTACTTCTTGGCTGTAATTTTGGCCTGGGGGTCCTTGGCCACACATCGGGACTGCAGTGCAGTCAGCATCTCCTTGCTGGTCAGTCTCGCTCCCTTCATCATTAGTCTTTCTCCATCCATGAATGTGATGTCCACCACTGGTTCAGACTGGTCGTGTTTAACTTCTGTCATCACCTCACAGTTCATATTTGTCGATCTGGCCTTCTCAGACCCAACCAGGACCAGGAACTCCCTGCAAGGACACCAACATTGAACATCACACTAACAGGGGATGCACGTCTGTGTGGGTTGACCCCTCACCCGAATAAGATCTATAGATCAATTTCACCCATTTAGAGGATCAAGCAATCTGTCAAATACCTACCAGCCATCC

Function

symbol description
mrpl53 Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL53 (mitochondrial ribosomal protein L53).

NR:

description
39S ribosomal protein L53, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2626766 False 456 lncRNA 0.48 3 11545314 11548620
TU2626767 True 377 lncRNA 0.49 2 11545314 11547223

Neighbor

gene id symbol gene type direction distance location
LOC118946500 LOC106570575 coding upstream 280448 11262547 ~ 11278404 (+)
LOC110487935 LOC106570554 coding upstream 310846 11193050 ~ 11234468 (+)
il6 il-6 coding upstream 540878 11002048 ~ 11004436 (+)
LOC110489377 LOC106588728 coding upstream 735915 10759051 ~ 10809399 (+)
polr1f twistnb coding upstream 869714 10670248 ~ 10675600 (+)
LOC110487925 LOC106570566 coding downstream 4729 11553349 ~ 11656524 (+)
LOC110487927 LOC106588816 coding downstream 115380 11664000 ~ 11742813 (+)
LOC110487931 LOC106570561 coding downstream 266487 11815107 ~ 11841142 (+)
LOC110487932 LOC106570557 coding downstream 357585 11906205 ~ 11910366 (+)
LOC110487934 LOC106570559 coding downstream 382938 11931558 ~ 11959079 (+)
G2296259 NA non-coding upstream 1620 11542011 ~ 11543694 (+)
G2296256 NA non-coding upstream 44501 11500566 ~ 11500813 (+)
G2296253 NA non-coding upstream 51797 11493248 ~ 11493517 (+)
G2296249 NA non-coding upstream 64531 11480480 ~ 11480783 (+)
G2296248 NA non-coding upstream 65981 11479051 ~ 11479333 (+)
G2296297 NA non-coding downstream 38155 11586775 ~ 11588213 (+)
G2296302 NA non-coding downstream 44903 11593523 ~ 11594319 (+)
G2296304 NA non-coding downstream 46083 11594703 ~ 11595368 (+)
G2296321 NA non-coding downstream 85328 11633948 ~ 11634420 (+)
G2296334 NA non-coding downstream 194965 11743585 ~ 11747039 (+)
G2296150 LOC106570575 other upstream 255011 11285493 ~ 11290303 (+)
LOC110487904 snrpd1 other upstream 1024007 10509464 ~ 10521398 (+)
LOC118946540 NA other upstream 1221726 10318805 ~ 10323588 (+)
G2294925 NA other upstream 1413663 10130116 ~ 10131651 (+)
G2294452 LOC106570648 other upstream 2207559 9335335 ~ 9337755 (+)
G2296278 NA other downstream 14927 11563547 ~ 11564590 (+)
G2296450 NA other downstream 366576 11915196 ~ 11977297 (+)
G2298390 NA other downstream 2081442 13630062 ~ 13630795 (+)
G2298739 NA other downstream 2204647 13753267 ~ 13753517 (+)

Expression


Co-expression Network