G2296334


Basic Information

Item Value
gene id G2296334
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 11743585 ~ 11747039 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2626831
tgggCAGGCACagcaatctttctctctctctctggactaaAGTATTCAGAAGCTCTGTGATAGGTTTAACTGTGTGATTGACAGGTGGCAGAGGCCAACCCACTGGTGCAGCTAGCTGATTGGTTTTGTTGACTTGTCTAACTCCACCCACTTCCTCTTgatgagaccagccacctggttGAAAGTGACGTTACTGTACTATGCTTTTAAATCCATGCCGAGGAGTATGCAAGTGCGCATTTCGGGAGAAGTGTGGAGAATCGGGACGTTGCCTAATACTCTTATTTGAAGGGCAATATAACAAGGGTTAAAGGTCAaagaagtacacacacacacacacacagtccagcaCCAGCTATATAAACACACTATTATACAGTACCCACTCTGTTCACAACCCAGCTTCCTCCTCACCTCGATTTTACTGCATAGGACTATCCTTTCTTTTACTCAACCCTTTTCTCTTTTTGGTCTTCTATTCGCACGTTTATGTAGATGGAGCtctgattcaattgttttttaagctaaatgttctccACTTTAAAGCTAAACAATTTATCCAACACTCAATGAATAAGAGAGGTTCGGTCGGCAGCGAAGAAGGGCGACAATAATTTAAGTGTTGTATCATTCATTCACCTGTAAGCTAAACCTGTGTTGTAAACATGGTATGACCTGGGTCTCATTCATTCACCTGTAGGCTAAACCTATGTTGTGAACATGTGACCTGGCTCACCTGTGACCTGGCTCTCATTCATTCACCTGTAAGCTAAACCTATGTTGAAAACATGGTATGACCTGGGTCTCGTTCATTCACCTGTAAGCTAAACCTATGTTGTAAACATGGTATGACCTGGGTCTCGTTTATTCACCTGTAAGCTAAACCTATGTTGTAAACATGGTATGACCTGGGTCTCATTCATTCACCTGTAGGCTAAACCTATGTTGTGAACATGGTATGACCTGGCTCTCATTCATTCACCTGTAGGCTAAACCTATGTTGTGAACATGGTATGACCTGGGTCTCGTTCATTCACCTGTAAGCTTAACCTATGTTGTGAACATGGTATGACCTGGGTCTCATTCACCTGTAAGCTAAACCTATGTTGTGAACATGGTATGACCTGGGTCTCATTCATTCACCTGTAGGCTAAACCTATGTTGTGAACATGGTATGACCTGGGTCTCGTTCATTCACCTGTAGGCTAAACCTATGTTGTGAACATGGTATGACCTGGGTCTCGTTCATTCACCTGTAAGCTAAACCTATGTTGTAAACATGGTATGACCTGGGTCTCGTTCATTCACCTGTAAGCTAAACCTATGTTGTAAACATGGTATGACCTGGGTCTCGTTCATTCACCTGTAAGCTAAACCTATGTTGTGAACATGGTATGACCTGGGTCTTATTCACCTGTAAGCTAAACCTATGTTGTGAACATGGTATGACCTGGGTCTCATTCACCTGTAAGCTAAACCTATGTTGTGAACATGGTATGACCTGGGTCTCGTTCATTCACCTGTAGGCTAAACCTATGTTGTGAACATGGTATGACCTGGGTCTCGTTCATTCACCTGTAAGCTAAACCTATGTTGTAAACATGGTATGACCTGGGTCTCATTCATTCACCTGTAAGCTAAACCTATGTTGTAAACATGGTATGACCTGGGTCTCATTCATTCACCTGAAGGCTAAACCTATGTTGTAAACATGGTATGACCTGGGTCTCATTCACCTGTAAGCTAAACCTATGTTGTAAACATGGTATGACCTGGGTCTCATTCACCTGTAGGCTAAACCTATGTTGTGAACATGGTATGAAACATGGTATGACCTGGGTCACTCATTCACCTGTAGGCTAAACCTATGTTGTGAACATGGTATGAAACATGGTATGACCTGGGTCTCATTCAGCTGTAGGCTAAACCTATGTTGTGAACATGGTATGAAACATGGTATGACCTGGGTCTCATTCACCTGTAGGCTAAACCTATGTTGTGAACATGGTATGAAACATGGTATGACCTGGGTCTCATTCACCTGTAGGCTAAACCTATGTTGTGAACATGGTATGAAACATGGTATGACCTGGGTCTCATTCACCTGTAGGCTAAACCTATGTTGTGAACATGGTATGAAACATGGTATGACCTGGGTCACTCATTCAAAGTCATTGTATTATGATGTGGACATCTGGTTGTTTAGAGATAAATCTATATACACTTAAAGAGTACATGTTTAAATCTAAATTGAAAGAGATGGATCtggctgttgttgttttttctactATTTTGCATTTATGAATGACTAttatatgttgtgtttatattcagCTGAAAGAAGACAGTGGATGCTGTAATAGTGTCATTCTGAGGAGAATTCTTTCATTCTGAAACCAAGgaaatgcttgttttgttacaTAGCACCAGCACTCCACAGTCacctaaatacacacacacacacacacacacacacacacacacacacacacacacacacagtaaccctCTATAATATCTGGAAGTGTTGTTTAGCAGCTCCAACCTGACAGCTcgctctgtgtgtgagagagcgtgagTGAGCTCTTCGGCTTGTGTCTGgcccaatgatgtatataaactctggatgactgacagggggcgctgtatTGAAGCCATCTTGGTATTCCTccattgtaaaaaaaacaaaaacaaatgtaaaaatgtattattatttttttcaaccCATAAAGTATAATTTTTagagtactaatgttactgtcctcactacaacaacaaatacttaaatacatgtcattttgtcctttgcatttaattgaaatactgtagaattccactcattcctatggaggactgatCTTACTGGGGAGTGGCAATATGGCCGACCactggcttcaaagcctctcattggccaatacatggcatcagcaatccagggtttatatgcCTCCCCCCCATCCTCGCCTCCTTCTGTTAAAAACAATTTGTTATGAAATGACAGGACGGGCAACGTTTAAGCTACAGGAGTCCACCCACCCGGGATTCTGTTGTTTTAACGTTTACCGTTGATGTTTGGTTTATTgtcaacgttccctctctctggtaTCTAATGGTGATGCCTTGTTTACCTCACTGTGGTGCTTTTCAACATTTGGGTTTAATAAACGGTATCCCCGTTCATAGAAATATCATTCAAGAAATATCATTCTAGATGATTTTTTCTATGTCGCCGTTGTTGTGTGTAGATGATCAGCCCGAGAGGTGCTGTGCACTCCGCTAGCAGGGAacgcagtggggggggggggtgtctattCTGGTCCAATAAAGTTTCACTATAATGCCCTTTTATATGTCCATGCTGTTACACTgtagtagaacatgaaaataaaaaaaacaactgcC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2626831 True 3402 lncRNA 0.42 2 11743585 11747039

Neighbor

gene id symbol gene type direction distance location
LOC110487927 LOC106588816 coding upstream 772 11664000 ~ 11742813 (+)
LOC110487925 LOC106570566 coding upstream 87061 11553349 ~ 11656524 (+)
LOC118946500 LOC106570575 coding upstream 478719 11262547 ~ 11278404 (+)
LOC110487935 LOC106570554 coding upstream 509117 11193050 ~ 11234468 (+)
il6 il-6 coding upstream 739149 11002048 ~ 11004436 (+)
LOC110487931 LOC106570561 coding downstream 68068 11815107 ~ 11841142 (+)
LOC110487932 LOC106570557 coding downstream 159166 11906205 ~ 11910366 (+)
LOC110487934 LOC106570559 coding downstream 184519 11931558 ~ 11959079 (+)
LOC110489380 LOC106570560 coding downstream 236252 11983291 ~ 12112461 (+)
LOC110487924 LOC106570549 coding downstream 399639 12146678 ~ 12153737 (+)
G2296321 NA non-coding upstream 109165 11633948 ~ 11634420 (+)
G2296304 NA non-coding upstream 148217 11594703 ~ 11595368 (+)
G2296302 NA non-coding upstream 149266 11593523 ~ 11594319 (+)
G2296297 NA non-coding upstream 155372 11586775 ~ 11588213 (+)
G2296282 mrpl53 non-coding upstream 194965 11545314 ~ 11548620 (+)
G2296335 NA non-coding downstream 12637 11759676 ~ 11761155 (+)
G2296374 NA non-coding downstream 15872 11762911 ~ 11763220 (+)
G2296376 NA non-coding downstream 18218 11765257 ~ 11767609 (+)
G2296410 NA non-coding downstream 136445 11883484 ~ 11911337 (+)
G2296278 NA other upstream 178995 11563547 ~ 11564590 (+)
G2296150 LOC106570575 other upstream 453282 11285493 ~ 11290303 (+)
LOC110487904 snrpd1 other upstream 1222278 10509464 ~ 10521398 (+)
LOC118946540 NA other upstream 1419997 10318805 ~ 10323588 (+)
G2294925 NA other upstream 1611934 10130116 ~ 10131651 (+)
G2296450 NA other downstream 168157 11915196 ~ 11977297 (+)
G2298390 NA other downstream 1883023 13630062 ~ 13630795 (+)
G2298739 NA other downstream 2006228 13753267 ~ 13753517 (+)
G2298884 NA other downstream 2267193 14014232 ~ 14015587 (+)

Expression


Co-expression Network