G2296376


Basic Information

Item Value
gene id G2296376
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 11765257 ~ 11767609 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2626887
CCATAATTCATTTTTAATGGTGGAACCAAGGCTTTTCTTACAAAAGTTTTCACTTCCTCAATAAATCCATGCCATGATGTGGCCAGTCGTCTTCCAGTAGGGGAGGACTTGCATCAGGCATGTATTTACACCAAATACTCACTAGTGTCCAAGGCTGTATGTATCATCACCAATGTGGTAtgtagttaaaaaatatatatattggttacatatttttttaatcataATGTAAACGCCAAAAATGTATTATCACACTATATATGGATATACTTTgagagtaaaaaaaaacattgaacagTAGAGAAGTACACAGCTTCCAGTGACTATCCTGTTTCAGCATTCCAAGCAGAGAGAAAATAGCCAAGTCCCTCACAGAAACCAATGAGACAAGTGGTCCAATATTGACTTTGGCCCCACCATGCGAGGCAGTGAGTGATATAGACTGAACGGAGAGTTAAAGCCTGCTGACATACCATAAGAAACCACGTAACTGGTGCAGTGACCACCGTTTCACACGGATCTGAATGCACTGGCCCACCCTCTCGAATGTCAGAGTTGACCACTATGAACTGCTTGGAGGTCAGATGTAGACCACCCCCCCTATGGTTAAACTGGGAGAGGAGTGTGTGAGCAACACTGATCTGGGATTAACTCTACTCAGCAGTGCTCTACACCACATTACTAGTGCTATTCAGACAGAGATGGACACGGTTTGAAGATATCGGTGACAGTAACAAATGTCTTTACCCGAGACCATCACTTCAGGTGTTAAGAGGACCATGCGTTCTCTAGAAATCACATCTTAAAGTAGTACAGTGATTAAGAAGCGAATGGGAAATTGAAGTACCTTCCAAAATACCTGTTCCAACTCAAAGACATGCAAATATAAGGGTTCTGTGCTATTAATACACAGAATAAAGCACCCCTGGCTGTGACACATTCTATCCTCTGTGTGCCATGTATCGTCTTCTGCTTGTGCAGGTTCCTAAACCACGGCCATTCTAATACAAACGCACAGTCATACAAACTTAAGTGTTACGGTGTCACAACAATATTTTCatcatttttaaaatatttatttggtTGTTGGATCTGTTTTGTTGTGCTGTGGGGTTTTGTAGCGAGAGGAGgtgaagaagggaggaggtgagagagagagagagaggagacagaagggaggaagtgagaggaggtgagagagagaggggagacagaagggaggaagtgagaggtgagagagagaggggagacagaagggTAAAGAGGGTATAGTTCCAGCGGATGTCAATCTGGCTGGGGGTCAGGGGTGAAAGGTCAGGCTGGTCTCACTGGAGATGTTCTTCCTGGAAGACAATGGGCGTGGCCTCTGGCTGTTTCTCCACGACAACAGACGGGTCAGAGGTTGCTGTAGAGGTCAACACGTCGCCAAAGTCACCCTGAGACACCGTCGGGCTC
>TU2626894
CCATAATTCATTTTTAATGGTGGAACCAAGGCTTTTCTTACAAAAGTTTTCACTTCCTCAATAAATCCATGCCATGATGTGGCCAGTCGTCTTCCAGTAGGGGAGGACTTGCATCAGGCATGTATTTACACCAAATACTCACTAGTGTCCAAGGCTGTATGTATCATCACCAATGTGGTAtgtagttaaaaaatatatatattggttacatatttttttaatcataATGTAAACGCCAAAAATGTATTATCACACTATATATGGATATACTTTgagagtaaaaaaaaacattgaacagTAGAGAAGTACACAGCTTCCAGTGACTATCCTGTTTCAGCATTCCAAGCAGAGAGAAAATAGCCAAGTCCCTCACAGAAACCAATGAGACAAGTGGTCCAATATTGACTTTGGCCCCACCATGCGAGGCAGTGAGTGATATAGACTGAACGGAGAGTTAAAGCCTGCTGACATACCATAAGAAACCACGTAACTGGTGCAGTGACCACCGTTTCACACGGATCTGAATGCACTGGCCCACCCTCTCGAATGTCAGAGTTGACCACTATGAACTGCTTGGAGGTCAGATGTAGACCACCCCCCCTATGGTTAAACTGGGAGAGGAGTGTGTGAGCAACACTGATCTGGGATTAACTCTACTCAGCAGTGCTCTACACCACATTACTAGTGCTATTCAGACAGAGATGGACACGGTTTGAAGATATCGGTGACAGTAACAAATGTCTTTACCCGAGACCATCACTTCAGGTGTTAAGAGGACCATGCGTTCTCTAGAAATCACATCTTAAAGTAGTACAGTGATTAAGAAGCGAATGGGAAATTGAAGTACCTTCCAAAATACCTGTTCCAACTCAAAGACATGCAAATATAAGGGTTCTGTGCTATTAATACACAGAATAAAGCACCCCTGGCTGTGACACATTCTATCCTCTGTGTGCCATGTATCGTCTTCTGCTTGTGCAGGTTCCTAAACCACGGCCATTCTAATACAAACGCACAGTCATACAAACTTAAGTGTTACGGTGTCACAACAATATTTTCatcatttttaaaatatttatttggtTGTTGGATCTGTTTTGTTGTGCTGTGGGGTTTTGTAGCGAGAGGAGgtgaagaagggaggaggtgagagagagagaggagacagaagggaggaagtgagaggaggtgagagagagaggggagacagaagggaggaagtgagaggaggtgagagagagagaggagacagaagggaggaagtgagaggaggtgagagagagagaggagacagaagggaggaagtgagaggagGTGAGACAGAAGGGGGGAagtgagaggaggtgagagagagagagagagagaggagacagacgggaggaagtgagaggaggtgagagagagaggagacagaagggaggaagtgagaggagGTGAGACAGAAGGGGGGAAGTGAGagtaggtgagagagagaggagacagaagggagGAAGTGAGAGGAAGTGAGACAGAAGGGGGGAagtgagaggaggtgagagagagaggggagacagaagggaggaagtgagaggtgagagagagaggggagacagaagggTAAAGAGGGTATAGTTCCAGCGGATGTCAATCTGGCTGGGGGTCAGGGGTGAAAGGTCAGGCTGGTCTCACTGGAGATGTTCTTCCTGGAAGACAATGGGCGTGGCCTCTGGCTGTTTCTCCACGACAACAGACGGGTCAGAGGTTGCTGTAGAGGTCAACACGTCGCCAAAGTCACCCTGAGACACCGTCGGGCTC
>TU2626896
CCATAATTCATTTTTAATGGTGGAACCAAGGCTTTTCTTACAAAAGTTTTCACTTCCTCAATAAATCCATGCCATGATGTGGCCAGTCGTCTTCCAGTAGGGGAGGACTTGCATCAGGCATGTATTTACACCAAATACTCACTAGTGTCCAAGGCTGTATGTATCATCACCAATGTGGTAtgtagttaaaaaatatatatattggttacatatttttttaatcataATGTAAACGCCAAAAATGTATTATCACACTATATATGGATATACTTTgagagtaaaaaaaaacattgaacagTAGAGAAGTACACAGCTTCCAGTGACTATCCTGTTTCAGCATTCCAAGCAGAGAGAAAATAGCCAAGTCCCTCACAGAAACCAATGAGACAAGTGGTCCAATATTGACTTTGGCCCCACCATGCGAGGCAGTGAGTGATATAGACTGAACGGAGAGTTAAAGCCTGCTGACATACCATAAGAAACCACGTAACTGGTGCAGTGACCACCGTTTCACACGGATCTGAATGCACTGGCCCACCCTCTCGAATGTCAGAGTTGACCACTATGAACTGCTTGGAGGTCAGATGTAGACCACCCCCCCTATGGTTAAACTGGGAGAGGAGTGTGTGAGCAACACTGATCTGGGATTAACTCTACTCAGCAGTGCTCTACACCACATTACTAGTGCTATTCAGACAGAGATGGACACGGTTTGAAGATATCGGTGACAGTAACAAATGTCTTTACCCGAGACCATCACTTCAGGTGTTAAGAGGACCATGCGTTCTCTAGAAATCACATCTTAAAGTAGTACAGTGATTAAGAAGCGAATGGGAAATTGAAGTACCTTCCAAAATACCTGTTCCAACTCAAAGACATGCAAATATAAGGGTTCTGTGCTATTAATACACAGAATAAAGCACCCCTGGCTGTGACACATTCTATCCTCTGTGTGCCATGTATCGTCTTCTGCTTGTGCAGGTTCCTAAACCACGGCCATTCTAATACAAACGCACAGTCATACAAACTTAAGTGTTACGGTGTCACAACAATATTTTCatcatttttaaaatatttatttggtTGTTGGATCTGTTTTGTTGTGCTGTGGGGTTTTGTAGCGAGAGGAGgtgaagaagggaggaggtgagagagagagaggagacagaagggaggaagtgagaggaggtgagagagagaggggagacagaagggaggaagtgagaggaggtgagagagagagaggagacagaagggaggaagtgagaggaggtgagagaggagacagaagggaggaagtgagaggagGTGAGACAGAAGGGGGGAagtgagaggaggtgagagagagagagagagaggagacagaagggaggaagtgagaggaggtgagagagagaggagacagaagggaggaagtgagaggagGTGAGACAGAAGGGGGGAAGTGAGagtaggtgagagagagaggagacagaagggagGAAGTGAGAGGAAGTGAGACAGAAGGGGGGAagtgagaggaggtgagagatagaggggagacagaagggaggaagtgagaggtgagagaggggagacagaagggaggaagtgagaggaggtgggagacagaatggaggaagtgagaggtgagaggaggtgggagacagaagggaggaagtgagaggagGTGGACAGAAGGGAGGaagtgagaggtgagagagaggggagacagaagggaggaagtgagaggaggagagagagagaggggagacagaagggGGGAAGTGAGagtaggtgagagagaggggagacagaagggaggaagtgagaggaggtgagagagagaggggagacagaagggaggaagtgagaggtgagagagagaggggagacagaagggTAAAGAGGGTATAGTTCCAGCGGATGTCAATCTGGCTGGGGGTCAGGGGTGAAAGGTCAGGCTGGTCTCACTGGAGATGTTCTTCCTGGAAGACAATGGGCGTGGCCTCTGGCTGTTTCTCCACGACAACAGACGGGTCAGAGGTTGCTGTAGAGGTCAACACGTCGCCAAAGTCACCCTGAGACACCGTCGGGCTC
>TU2626898
CCATAATTCATTTTTAATGGTGGAACCAAGGCTTTTCTTACAAAAGTTTTCACTTCCTCAATAAATCCATGCCATGATGTGGCCAGTCGTCTTCCAGTAGGGGAGGACTTGCATCAGGCATGTATTTACACCAAATACTCACTAGTGTCCAAGGCTGTATGTATCATCACCAATGTGGTAtgtagttaaaaaatatatatattggttacatatttttttaatcataATGTAAACGCCAAAAATGTATTATCACACTATATATGGATATACTTTgagagtaaaaaaaaacattgaacagTAGAGAAGTACACAGCTTCCAGTGACTATCCTGTTTCAGCATTCCAAGCAGAGAGAAAATAGCCAAGTCCCTCACAGAAACCAATGAGACAAGTGGTCCAATATTGACTTTGGCCCCACCATGCGAGGCAGTGAGTGATATAGACTGAACGGAGAGTTAAAGCCTGCTGACATACCATAAGAAACCACGTAACTGGTGCAGTGACCACCGTTTCACACGGATCTGAATGCACTGGCCCACCCTCTCGAATGTCAGAGTTGACCACTATGAACTGCTTGGAGGTCAGATGTAGACCACCCCCCCTATGGTTAAACTGGGAGAGGAGTGTGTGAGCAACACTGATCTGGGATTAACTCTACTCAGCAGTGCTCTACACCACATTACTAGTGCTATTCAGACAGAGATGGACACGGTTTGAAGATATCGGTGACAGTAACAAATGTCTTTACCCGAGACCATCACTTCAGGTGTTAAGAGGACCATGCGTTCTCTAGAAATCACATCTTAAAGTAGTACAGTGATTAAGAAGCGAATGGGAAATTGAAGTACCTTCCAAAATACCTGTTCCAACTCAAAGACATGCAAATATAAGGGTTCTGTGCTATTAATACACAGAATAAAGCACCCCTGGCTGTGACACATTCTATCCTCTGTGTGCCATGTATCGTCTTCTGCTTGTGCAGGTTCCTAAACCACGGCCATTCTAATACAAACGCACAGTCATACAAACTTAAGTGTTACGGTGTCACAACAATATTTTCatcatttttaaaatatttatttggtTGTTGGATCTGTTTTGTTGTGCTGTGGGGTTTTGTAGCGAGAGGAGgtgaagaagggaggaggtgagagagagagaggagacagaagggaggaagtgagaggaggtgagagagagaggggagacagaagggaggaagtgagaggaggtgagagagagagaggagacagaagggaggaagtgagaggaggtgagagaggagacagaagggaggaagtgagaggagGTGAGACAGAAGGGGGGAagtgagaggaggtgagagagagaggagacagaagggaggaagtgagaggagGTGAGACAGAAGGGGGGAagtgagaggaggtgagagagagagagagagaggagacagaagggaggaagtgagaggaggtgagagagagagaggagacagaagggaggaagtgagaggaggtgagagagagagaggagacagaagggaggaagtgagaggagGTGAGACAGAAGGGGGGAagtgagaggaggtgagagagagagagagagagaggagacagacgggaggaagtgagaggaggtgagagagagaggagacagaagggaggaagtgagaggagGTGAGACAGAAGGGGGGAAGTGAGagtaggtgagagagaggggagacagaagggaggaagtgagaggaggtgagagagagaggggagacagaagggaggaagtgagaggtgagagagagaggggagacagaagggTAAAGAGGGTATAGTTCCAGCGGATGTCAATCTGGCTGGGGGTCAGGGGTGAAAGGTCAGGCTGGTCTCACTGGAGATGTTCTTCCTGGAAGACAATGGGCGTGGCCTCTGGCTGTTTCTCCACGACAACAGACGGGTCAGAGGTTGCTGTAGAGGTCAACACGTCGCCAAAGTCACCCTGAGACACCGTCGGGCTC

Function

NR:

description
tumor protein D52-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2626887 False 1455 lncRNA 0.44 3 11765257 11767609
TU2626894 False 1794 lncRNA 0.47 3 11765257 11767609
TU2626896 False 2079 lncRNA 0.48 3 11765257 11767609
TU2626898 True 1989 lncRNA 0.48 3 11765257 11767609

Neighbor

gene id symbol gene type direction distance location
LOC110487927 LOC106588816 coding upstream 22444 11664000 ~ 11742813 (+)
LOC110487925 LOC106570566 coding upstream 108733 11553349 ~ 11656524 (+)
LOC118946500 LOC106570575 coding upstream 500391 11262547 ~ 11278404 (+)
LOC110487935 LOC106570554 coding upstream 530789 11193050 ~ 11234468 (+)
il6 il-6 coding upstream 760821 11002048 ~ 11004436 (+)
LOC110487931 LOC106570561 coding downstream 47498 11815107 ~ 11841142 (+)
LOC110487932 LOC106570557 coding downstream 138596 11906205 ~ 11910366 (+)
LOC110487934 LOC106570559 coding downstream 163949 11931558 ~ 11959079 (+)
LOC110489380 LOC106570560 coding downstream 215682 11983291 ~ 12112461 (+)
LOC110487924 LOC106570549 coding downstream 379069 12146678 ~ 12153737 (+)
G2296374 NA non-coding upstream 2037 11762911 ~ 11763220 (+)
G2296335 NA non-coding upstream 4102 11759676 ~ 11761155 (+)
G2296334 NA non-coding upstream 18218 11743585 ~ 11747039 (+)
G2296321 NA non-coding upstream 130837 11633948 ~ 11634420 (+)
G2296304 NA non-coding upstream 169889 11594703 ~ 11595368 (+)
G2296410 NA non-coding downstream 115875 11883484 ~ 11911337 (+)
G2296443 NA non-coding downstream 124322 11891931 ~ 11894859 (+)
G2296448 NA non-coding downstream 133910 11901519 ~ 11962202 (+)
G2296278 NA other upstream 200667 11563547 ~ 11564590 (+)
G2296150 LOC106570575 other upstream 474954 11285493 ~ 11290303 (+)
LOC110487904 snrpd1 other upstream 1243950 10509464 ~ 10521398 (+)
LOC118946540 NA other upstream 1441669 10318805 ~ 10323588 (+)
G2294925 NA other upstream 1633606 10130116 ~ 10131651 (+)
G2296450 NA other downstream 147587 11915196 ~ 11977297 (+)
G2298390 NA other downstream 1862453 13630062 ~ 13630795 (+)
G2298739 NA other downstream 1985658 13753267 ~ 13753517 (+)
G2298884 NA other downstream 2246623 14014232 ~ 14015587 (+)

Expression


Co-expression Network