G2296920


Basic Information

Item Value
gene id G2296920
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 12119372 ~ 12120455 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2627599
tggtcacacagtTAGCAGATGTTGTAGAgccaacagtgcagcagtatctaacaggtaatatctaacaattcctcaacaaaacctaataaatgaatgagaatatataagtacaaaatatggatgagcagtgacagagcagtTAAAATGCAATAGATTGtaaagaatacagtatatacatatgagatgagtagtgtGAAATGTGGCATTAAAGTGACTCGTGTTCCACTTAGTGGCCAGTGATaccaagtctgtaggtaggcagccacctctgtgctagtgatggctgttcaacaaTGACAGCCTTGAGATAATTGTTTGTACCTCACCTTCAGGATacaagcggggtgaacaggtagtagctcgggtggttattgtccttcatgatcttttttgccttcctgtgacatcgggtgttgtatgtgtcctggagggcaggtagtttgcccccagtgattaAGTGTTTATGTCATAGGACAGTCCTGAAGCATATGTACAGTGTGCATTAAAACTGCACTATAACAAAATCCTAAGTGTAATTGACCACCAACAAATACCATTTAAAAAGTCAACAGCAAAGTAAAATAAAAACTAGGAGGCGCCTCTTTTCATAGCCGCGTTGTAAAAAGGGTATGGTTAAAGTAAAAATCTTGCGCAAGTACCTCAGATGTTACGCAAAGAAAATATATAAACGAACTAAAGGCATCAATGCCAGAATGTTACTTGAGAAGCACAGGCGTCGCCTGAAGGATTTCACCAGTACATTCAGTCAATCATCCTCCCCTGAGGGTTAATTTTCCTTTTGTTCTGTGACCTCATCATCTTCTGTGACATCCTCatcctcatcatcatcttctGTGACATCAGACCTGGGTGTGAAAACACTGTTGGTACTGGGGGCATCAGGTTCTTCTAGTCCCTCAAAATTGTCATCAGCACCAAGCGCAATCTCTCGCAGGTCCTCTAGACTTTCCGGACTCTTTCCAGTTAACCTCTG
>TU2627600
tggtcacacagtTAGCAGATGTTGTAGAgccaacagtgcagcagtatctaacaggtaatatctaacaattcctcaacaaaacctaataaatgaatgagaatatataagtacaaaatatggatgagcagtgacagagcagtTAAAATGCAATAGATTGtaaagaatacagtatatacatatgagatgagtagtgtGAAATGTGGCATTAAAGTGACTCGTGTTCCACTTAGTGGCCAGTGATaccaagtctgtaggtaggcagccacctctgtgctagtgatggctgttcaacaaTGACAGCCTTGAGATAATTGTTTGTACCTCACCTTCAGGATacaagcggggtgaacaggtagtagctcgggtggttattgtccttcatgatcttttttgccttcctgtgacatcgggtgttgtatgtgtcctggagggcaggtagtttgcccccagtgattaAGTGTTTATGTCATAGGACAGTCCTGAAGCATATGTACAGTGTGCATTAAAACTGCACTATAACAAAATCCTAAGTGTAATTGACCACCAACAAATACCATTTAAAAAGTCAACAGCAAAGTAAAATAAAAACTAGGAGGCGCCTCTTTTCATAGCCGCGTTGTAAAAAGGGTATGGTTAAAGTAAAAATCTTGCGCAAGTACCTCAGATGTTACGCAAAGAAAATATATAAACGAACTAAAGGCATCAATGCCAGAATGTTACTTGAGAAGCACAGGCGTCGCCTGAAGGATTTCACCAGTACATTCAGTCAATCATCCTCCCCTGAGGGTTAATTTTCCTTTTGTTCTGTGACCTCATCATCTTCTGTGACATCCTCATCATCCTCTTCTGTgacatcctcatcttctGTGACATCAGACCTGGGTGTGAAAACACTGTTGGTACTGGGGGCATCAGGTTCTTCTAGTCCCTCAAAATTGTCATCAGCACCAAGCGCAATCTCTCGCAGGTCCTCTAGACTTTCCGGACTCTTTCCAGTTAACCTCTG

Function

NR:

description
geminin-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2627599 False 994 lncRNA 0.42 2 12119372 12120455
TU2627600 True 1006 lncRNA 0.42 2 12119372 12120455

Neighbor

gene id symbol gene type direction distance location
LOC110489380 LOC106570560 coding upstream 6911 11983291 ~ 12112461 (+)
LOC110487934 LOC106570559 coding upstream 160293 11931558 ~ 11959079 (+)
LOC110487932 LOC106570557 coding upstream 209741 11906205 ~ 11910366 (+)
LOC110487931 LOC106570561 coding upstream 278230 11815107 ~ 11841142 (+)
LOC110487927 LOC106588816 coding upstream 376559 11664000 ~ 11742813 (+)
LOC110487924 LOC106570549 coding downstream 26223 12146678 ~ 12153737 (+)
col8a2 LOC106570550 coding downstream 202416 12322871 ~ 12414149 (+)
LOC110487937 LOC106588828 coding downstream 304588 12425043 ~ 12472248 (+)
LOC118946451 adgrb2 coding downstream 1153765 13274220 ~ 13491588 (+)
LOC110487938 adgrb2 coding downstream 1387133 13507588 ~ 13724989 (+)
G2296883 NA non-coding upstream 81887 12037284 ~ 12037485 (+)
G2296875 NA non-coding upstream 94797 12024325 ~ 12024575 (+)
G2296870 NA non-coding upstream 105767 12013292 ~ 12013605 (+)
G2296869 NA non-coding upstream 108225 12010948 ~ 12011147 (+)
G2296481 NA non-coding upstream 131737 11984372 ~ 11987635 (+)
G2296941 NA non-coding downstream 55051 12175506 ~ 12176079 (+)
G2297039 NA non-coding downstream 114050 12234505 ~ 12235139 (+)
G2297045 NA non-coding downstream 118813 12239268 ~ 12301910 (+)
G2297072 NA non-coding downstream 201055 12321510 ~ 12322066 (+)
G2297082 NA non-coding downstream 222581 12343036 ~ 12344731 (+)
G2296450 NA other upstream 201232 11915196 ~ 11977297 (+)
G2296278 NA other upstream 554782 11563547 ~ 11564590 (+)
G2296150 LOC106570575 other upstream 829069 11285493 ~ 11290303 (+)
LOC110487904 snrpd1 other upstream 1598065 10509464 ~ 10521398 (+)
G2298390 NA other downstream 1509607 13630062 ~ 13630795 (+)
G2298739 NA other downstream 1632812 13753267 ~ 13753517 (+)
G2298884 NA other downstream 1893777 14014232 ~ 14015587 (+)
LOC118936620 LOC106570515 other downstream 2086711 14207166 ~ 14225549 (+)
G2299191 NA other downstream 2183281 14303736 ~ 14304232 (+)

Expression


Co-expression Network