XLOC_004184 (dhrs3b)


Basic Information

Item Value
gene id XLOC_004184
gene name dhrs3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 28590733 ~ 28614608 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008005
TAAAGCAATACTTCTGTCAGTCCTCCAGCTGTCAATCAAGATAAATAGTCTCTTAAAAACCCCTATCAGACCCGAGGTATCGTCATAGTTGGACTCTGGCCGCTGTCAGTAGCGACAGGACTCAGTCTCCGGTGCAAAACAGCAGCGCACACTTGTCGCAGCAAGAGCTCCGTGGATAAAGAGTTTATGTCGGAATAAAGGTGCGCAAAATGACAGATATTCCTCAGAGGCGCACATGAACTGCCTTGGACCGCGTTTCACTCTATTAAGAGTGAGTCAGCTCTGCAAAATAAGGCGAATTGCCTTATTCACTCATTTAAATAGGAGTAAAGGTGATCGCTCCGAGCAAGGATTCAATTAGTTCGGCAATTGTTCCAGGCGAGAACTGAGATAAGCGGACACTGAGACGGAGTGAAATGGATCTGAAGGCGCTGGGCTGCGTGGTGCTCTTACCTATTCagatactatactatactgtcaAGGCGACCGTGTGCTGGTTCCTACCGAGCAGGCGGAGAGATCTGACCGGAGATGTAGTGCTTATCACGGGTGGCGGACGGGGCATTGGCCGTCACCTGGCTAAGGAGTTCGCCGTGCGTGGAGCTAAAAAGCTAATTCTGTGGGGCCGGACGGAAAAATGTCTGAAGGAGACTTGTGAGGAGATCACCCTCATGGGGACAGAGTGCCATTATTTCGTTTGCGATGTGGCCAACAGGGAAGAAGTCTACAAGCAAGCCAAGGTTGTCAGAGAAAAGGTGGGAGATGTGACCATTCTGGTTAATAATGCTGCAGTGGTGCATGGCAAGAGTTTGCTGGACAGTGATGATGATGCTCTTCTCAAGTCGCAACACATCAATACAATGGGACAGTTTTGGACCACGAAAGCCTTCCTGCCTCGTATGCTGGAACTCCAAAATGGCCATGTTGTGTGTGTCAACTCCATCCTGTCACTGTCCCCCATCCCCGGTGCTATAGATTACTGTACATCTAAAGCTTCTTCACTGGCCTTCATGGAGAGCTTGACTCTGGGGCTGCTGGACTGTCCAGGTGTGGCCTGCACCACCGTCCTCCCGTTCCACACCAACACTGAAATGTTTCAGGGCATGAGAGTGAGgtTTCCGCAACTTTTTCCTCCTCTAAAGCCAGAGGTTGTAGCACAGAGAACAGTGGATGCTGTTCGGACAAATACAGCCTTTGTTTACTTACCCTGGACCATGAACGCACTCGTTATCCTCAAAAGCATGCTACCACAGAGTGCACTGGAGGAAATCCACAGATTCTCAGGAACCTACACCTGCATGAATACATTCAAGGGGCGGACATGAGAGATTTAGGAATAACACAGGAGTTTCAAGTGTTACATAAttttaaacaaactgttttttattaaacaaaggcTCTGGAGTTGTTCTTTCACGAGCATTGAGttagaagaaaaaaagacagagaGCCAGAACGCATTTCCAGGACTGTTTGCAGGTCAGCACTGACCTTTGTGTTGCGTTGTTGGACAAACAcagaatggaagaaaaaaaagaagcctCAGTTGATCgctgtgctgtactgtatgtgtactttaatgttttttaacaatCACCTTTTAACTACTGTCACTGTAAATTCTGCAtctgaataaaaaagaaaaaaaaaga
>TCONS_00008006
AATGTCTGGGTTAGATAAGAACCAGCGGTATGGCGACACTGACTGGCtgtaaaaaaagagaacaaataaTCTGTTATGGAAAGGAGAATAACTAATAGTGggtcttttatttttatgctaGGTGGGAGATGTGACCATTCTGGTTAATAATGCTGCAGTGGTGCATGGCAAGAGTTTGCTGGACAGTGATGATGATGCTCTTCTCAAGTCGCAACACATCAATACAATGGGACAGTTTTGGACCACGAAAGCCTTCCTGCCTCGTATGCTGGAACTCCAAAATGGCCATGTTGTGTGTGTCAACTCCATCCTGTCACTGTCCCCCATCCCCGGTGCTATAGATTACTGTACATCTAAAGCTTCTTCACTGGCCTTCATGGAGAGCTTGACTCTGGGGCTGCTGGACTGTCCAGGTGTGGCCTGCACCACCGTCCTCCCGTTCCACACCAACACTGAAATGTTTCAGGGCATGAGAGTGAGgtTTCCGCAACTTTTTCCTCCTCTAAAGCCAGAGGTTGTAGCACAGAGAACAGTGGATGCTGTTCGGACAAATACAGCCTTTGTTTACTTACCCTGGACCATGAACGCACTCGTTATCCTCAAAAGCATGCTACCACAGAGTGCACTGGAGGAAATCCACAGATTCTCAGGAACCTACACCTGCATGAATACATTCAAGGGGCGGACATGAGAGATTTAGGAATAACACAGGAGTTTCAAGTGTTACATAAttttaaacaaactgttttttattaaacaaaggcTCTGGAGTTGTTCTTTCACGAGCATTGAGttagaagaaaaaaagacagagaGCCAGAACGCATTTCCAGGACTGTTTGCAGGTCAGCACTGACCTTTGT

Function

symbol description
dhrs3b Predicted to enable NAD-retinol dehydrogenase activity. Predicted to be involved in regulation of retinoic acid receptor signaling pathway and retinoid metabolic process. Predicted to act upstream of or within retinol metabolic process. Predicted to be active in lipid droplet. Is expressed in several structures, including axis; margin; myotome; nervous system; and ventral mesoderm. Orthologous to human DHRS3 (dehydrogenase/reductase 3).

GO:

id name namespace
GO:0001523 retinoid metabolic process biological_process
GO:0042572 retinol metabolic process biological_process
GO:0048385 regulation of retinoic acid receptor signaling pathway biological_process
GO:0005811 lipid droplet cellular_component
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor molecular_function
GO:0004745 retinol dehydrogenase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041010-172 Predicted to enable NAD-retinol dehydrogenase activity. Predicted to be involved in regulation of retinoic acid receptor signaling pathway and retinoid metabolic process. Predicted to act upstream of or within retinol metabolic process. Predicted to be active in lipid droplet. Is expressed in several structures, including axis; margin; myotome; nervous system; and ventral mesoderm. Orthologous to human DHRS3 (dehydrogenase/reductase 3).

Ensembl:

ensembl_id ENSDARG00000044803

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008005 False 1652 mRNA 0.47 6 28590733 28614608
TCONS_00008006 True 863 processed_transcript 0.45 4 28590888 28595428

Neighbor

gene id symbol gene type direction distance location
XLOC_004183 BX649345.1 coding downstream 65237 28522364 ~ 28525496 (-)
XLOC_004182 NA coding downstream 68389 28513742 ~ 28522344 (-)
XLOC_004181 NA coding downstream 166592 28418876 ~ 28424141 (-)
XLOC_004179 lactbl1b coding downstream 200632 28127199 ~ 28390101 (-)
XLOC_004180 NA coding downstream 390229 28196957 ~ 28200504 (-)
XLOC_004185 klhdc7a coding upstream 19109 28633717 ~ 28639498 (-)
XLOC_004186 igsf21a coding upstream 28305 28642913 ~ 29082429 (-)
XLOC_004187 NA coding upstream 470758 29085366 ~ 29088626 (-)
XLOC_004188 NA coding upstream 485319 29099927 ~ 29319919 (-)
XLOC_004189 arhgef10la coding upstream 716534 29331142 ~ 29563437 (-)
XLOC_004063 CR854846.1 misc downstream 12463055 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 15899042 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 15968966 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 15999437 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 16077471 12512966 ~ 12513262 (-)
XLOC_004174 NA non-coding downstream 781018 27800859 ~ 27809715 (-)
XLOC_004190 NA non-coding upstream 923374 29537982 ~ 29544989 (-)
XLOC_004193 NA non-coding upstream 1119970 29734578 ~ 29737247 (-)
XLOC_004198 CU652893.1 non-coding upstream 1346506 29961114 ~ 29961901 (-)

Expression


Co-expression Network