G2297177


Basic Information

Item Value
gene id G2297177
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 12552690 ~ 12556516 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2627903
AGTTTGGCTCTGATGGAATGTTGTAGGACTTGCTAGGTGTGCTCTGATGCAATGTTGTTGTAGGACATGCTAGGTGTGCTCTGATGGAATGTTGTTGTAGGACATGCTAGGTGTGCTCTGATGCAATGTTGTTGTAGGACATGCTTGGTGTGCTCTGATGCTATGTTGTTGTAGGACATGCTAGGTGTGCTCTGATGCAATGTTGTTGTAGGACATGCTAGGTGTGCTCTGATGGAATGTTTTATTAGCTGGTCCAAAGTCTTAAGGATGTACATCTTTTTCATATTTTTAGACTGCCCTTGTCTTTAACCGTCATGGTTGAGTACTCTATTCATATCTATGTCATTTCCCCGTA
>TU2627904
AGTTTGGCTCTGATGGAATGTTGTAGGACTTGCTAGGTGTGCTCTGATGCAATGTTGTTGTAGGACATGCTAGGTGTGCTCTGATGCAATGTTGTTGTAGGACATGCTTGGTGTGCTCTGATGCTATGTTGTTGTAGGACATGCTAGGTGTGCTCTGATGCAATGTTGTTGTAGGACATGCTAGGTGTGCTCTGATGGAATGTTTTATTAGCTGGTCCAAAGTCTTAAGGATGTACATCTTTTTCATATTTTTAGACTGCCCTTGTCTTTAACCGTCATGGTTGAGTACTCTATTCATATCTATGTCATTTCCCCGTA
>TU2627907
TTGTAGGACAGGATCGGTGTGGTCTGATGGAATGTTGTTGTAGGACATGCTAGGTGTGCTCTGATGGAATGTTGTTGTAGGACATACTAGGTGTGCTCTGATGGAATGTTGTTGTAGGACATGCTAGGTGTGCTCTGATGCAATGTTGTTGTAGGACATGCTTGGTGTGCTCTGATGCTATGTTGTTGTAGGACATGCTAGGTGTGCTCTGATGCAATGTTGTTGTAGGACATGCTAGGTGTGCTCTGATGGAATGTTTTATTAGCTGGTCCAAAGTCTTAAGGATGTACATCTTTTTCATATTTTTAGACTGCCCTTGTCTTTAACCGTCATGGTTGAGTACTCTATTCATATCTATGTCATTTCCCCGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2627903 False 355 lncRNA 0.43 3 12552690 12556516
TU2627904 False 318 lncRNA 0.42 2 12552690 12556516
TU2627907 True 372 lncRNA 0.43 3 12556000 12556516

Neighbor

gene id symbol gene type direction distance location
LOC110487937 LOC106588828 coding upstream 80442 12425043 ~ 12472248 (+)
col8a2 LOC106570550 coding upstream 138541 12322871 ~ 12414149 (+)
LOC110487924 LOC106570549 coding upstream 398953 12146678 ~ 12153737 (+)
LOC110489380 LOC106570560 coding upstream 440229 11983291 ~ 12112461 (+)
LOC110487934 LOC106570559 coding upstream 593611 11931558 ~ 11959079 (+)
LOC118946451 adgrb2 coding downstream 717704 13274220 ~ 13491588 (+)
LOC110487938 adgrb2 coding downstream 951072 13507588 ~ 13724989 (+)
LOC110487940 LOC106588839 coding downstream 1294459 13850975 ~ 14003434 (+)
LOC110487944 LOC106570514 coding downstream 1588485 14145001 ~ 14175807 (+)
LOC110487945 cbx3 coding downstream 1621803 14178319 ~ 14187277 (+)
G2297146 NA non-coding upstream 54112 12496020 ~ 12498578 (+)
G2297133 NA non-coding upstream 69796 12478984 ~ 12482894 (+)
G2297127 NA non-coding upstream 87602 12464038 ~ 12465088 (+)
G2297096 NA non-coding upstream 134481 12417942 ~ 12418209 (+)
G2297098 NA non-coding upstream 176950 12375175 ~ 12375740 (+)
G2297185 NA non-coding downstream 7642 12564158 ~ 12580049 (+)
G2297393 NA non-coding downstream 40313 12596829 ~ 12597065 (+)
G2297430 NA non-coding downstream 64974 12621490 ~ 12621704 (+)
G2297472 NA non-coding downstream 110860 12667376 ~ 12667953 (+)
G2297474 NA non-coding downstream 113853 12670369 ~ 12671333 (+)
G2296450 NA other upstream 634550 11915196 ~ 11977297 (+)
LOC110487932 LOC106570557 other upstream 644024 11906205 ~ 11910366 (+)
G2296278 NA other upstream 988100 11563547 ~ 11564590 (+)
G2296150 LOC106570575 other upstream 1262387 11285493 ~ 11290303 (+)
LOC110487904 snrpd1 other upstream 2031383 10509464 ~ 10521398 (+)
G2298390 NA other downstream 1073546 13630062 ~ 13630795 (+)
G2298739 NA other downstream 1196751 13753267 ~ 13753517 (+)
G2298884 NA other downstream 1457716 14014232 ~ 14015587 (+)
LOC118936620 LOC106570515 other downstream 1650650 14207166 ~ 14225549 (+)
G2299191 NA other downstream 1747220 14303736 ~ 14304232 (+)

Expression


Co-expression Network