G2298313


Basic Information

Item Value
gene id G2298313
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 13485031 ~ 13485463 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2629101
gtactgagttgatgtgtaggggtatgaggtatatatgtatataggtaggagtaaagtgactaggcaatatgatagataatagacagtaacagcagtatactgtaggtaggggtaaaggatagataatagacagtaacagcagtatactgtaggtaggggtaaaggatagataatagacagtaacagcagtatactgtaggtaggggtaaaggatatataatagacagtaacagcagtatactgtaggtaggggtaaaggatagataatagacagtaacagcagtatactgtaggtaggggtaaaggatagataataaacagtaacagcagtatactgta
>TU2629102
gtactgagttgatgtgtaggggtatgaggtatatatgtatataggtaggagtaaagtgactaggcaatatgatagataatagacagtaacagcagtatactgtaggtaggggtaaaggatagataatagacagtaacagcggtatgctgtaggtaggggtaaaggatagataataaacagtaacagcagtatactgtaggtaggggtaaaggatagataatagacagtaacagcagtatactgtaggtaggggtaaaggatatataatagacagtaacagcagtatactgtaggtaggggtaaaggatagataatagacagtaacagcagtatactgtaggtaggggtaaaggatagataataaacagtaacagcagtatactgta
>TU2629103
gtactgagttgatgtgtaggggtatgaggtatatatgtatataggtaggagtaaagtgactaggcaatatgatagataatagacagtaacagcagtatactgtaggtaggggtaaaggatagataatagacagtaacagcagtatactgtaggtaggggtaaaggatagataataaacagtaacagcagtatactgtaggtaggggtaaaggatagataatagacagtaacagcagtatactgtaggtaggggtaaaggatatataatagacagtaacagcagtatactgtaggtaggggtaaaggatagataatagacagtaacagcagtatactgtaggtaggggtaaaggatagataataaacagtaacagcagtatactgta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2629101 False 339 lncRNA 0.37 2 13485031 13485463
TU2629102 False 386 lncRNA 0.37 2 13485031 13485463
TU2629103 True 386 lncRNA 0.37 2 13485031 13485463

Neighbor

gene id symbol gene type direction distance location
LOC110487937 LOC106588828 coding upstream 1012783 12425043 ~ 12472248 (+)
col8a2 LOC106570550 coding upstream 1070882 12322871 ~ 12414149 (+)
LOC110487924 LOC106570549 coding upstream 1331294 12146678 ~ 12153737 (+)
LOC110489380 LOC106570560 coding upstream 1372570 11983291 ~ 12112461 (+)
LOC110487934 LOC106570559 coding upstream 1525952 11931558 ~ 11959079 (+)
LOC110487938 adgrb2 coding downstream 22125 13507588 ~ 13724989 (+)
LOC110487940 LOC106588839 coding downstream 365512 13850975 ~ 14003434 (+)
LOC110487944 LOC106570514 coding downstream 659538 14145001 ~ 14175807 (+)
LOC110487945 cbx3 coding downstream 692856 14178319 ~ 14187277 (+)
LOC118936620 LOC106570515 coding downstream 721910 14207166 ~ 14225549 (+)
G2298312 NA non-coding upstream 435 13483664 ~ 13484596 (+)
G2298275 NA non-coding upstream 61611 13422045 ~ 13423420 (+)
G2298211 NA non-coding upstream 163084 13321541 ~ 13321947 (+)
G2298129 NA non-coding upstream 270451 13214294 ~ 13214580 (+)
G2298126 NA non-coding upstream 272672 13212136 ~ 13212359 (+)
G2298360 NA non-coding downstream 92798 13578261 ~ 13578491 (+)
G2298367 NA non-coding downstream 101389 13586852 ~ 13587059 (+)
G2298370 NA non-coding downstream 107093 13592556 ~ 13592797 (+)
G2298372 NA non-coding downstream 108892 13594355 ~ 13594604 (+)
G2298381 NA non-coding downstream 123861 13609324 ~ 13609617 (+)
G2296450 NA other upstream 1566891 11915196 ~ 11977297 (+)
LOC110487932 LOC106570557 other upstream 1576365 11906205 ~ 11910366 (+)
G2296278 NA other upstream 1920441 11563547 ~ 11564590 (+)
G2296150 LOC106570575 other upstream 2194728 11285493 ~ 11290303 (+)
LOC110487904 snrpd1 other upstream 2963724 10509464 ~ 10521398 (+)
G2298390 NA other downstream 144599 13630062 ~ 13630795 (+)
G2298739 NA other downstream 267804 13753267 ~ 13753517 (+)
G2298884 NA other downstream 528769 14014232 ~ 14015587 (+)
G2299191 NA other downstream 818273 14303736 ~ 14304232 (+)

Expression


Co-expression Network