G2298387 (LOC105030512)


Basic Information

Item Value
gene id G2298387
gene name LOC105030512
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 13622217 ~ 13622469 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2629180
tctgtgtgaatgtgccttaggcatgctgcaaggaggcatgaggactgcagatgtggccagggcaataaattgcaatgtccttcctgtgagacgcctaagacagcgctacagggagacaggacggacagctgatcgccctcgcagtggcagaccacgtgtaacaacacctgcacaggatcggtacatccgaacatcacacctgcgggacaggtacaggatggcaacaacaactgcccgagttacaccaggaacg

Function

NR:

description
PREDICTED: uncharacterized protein LOC105030512

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2629180 True 253 lncRNA 0.55 1 13622217 13622469

Neighbor

gene id symbol gene type direction distance location
LOC118946451 adgrb2 coding upstream 130629 13274220 ~ 13491588 (+)
LOC110487937 LOC106588828 coding upstream 1149969 12425043 ~ 12472248 (+)
col8a2 LOC106570550 coding upstream 1208068 12322871 ~ 12414149 (+)
LOC110487924 LOC106570549 coding upstream 1468480 12146678 ~ 12153737 (+)
LOC110489380 LOC106570560 coding upstream 1509756 11983291 ~ 12112461 (+)
LOC110487940 LOC106588839 coding downstream 228506 13850975 ~ 14003434 (+)
LOC110487944 LOC106570514 coding downstream 522532 14145001 ~ 14175807 (+)
LOC110487945 cbx3 coding downstream 555850 14178319 ~ 14187277 (+)
LOC118936620 LOC106570515 coding downstream 584904 14207166 ~ 14225549 (+)
LOC110487946 LOC106570515 coding downstream 620288 14242757 ~ 14260096 (+)
G2298385 NA non-coding upstream 2720 13619284 ~ 13619497 (+)
G2298384 NA non-coding upstream 5024 13616988 ~ 13617193 (+)
G2298381 NA non-coding upstream 12600 13609324 ~ 13609617 (+)
G2298372 NA non-coding upstream 27613 13594355 ~ 13594604 (+)
G2298370 NA non-coding upstream 29420 13592556 ~ 13592797 (+)
G2298392 NA non-coding downstream 5877 13628346 ~ 13629099 (+)
G2298400 NA non-coding downstream 27439 13649908 ~ 13650113 (+)
G2298401 NA non-coding downstream 27848 13650317 ~ 13650619 (+)
G2298403 NA non-coding downstream 30029 13652498 ~ 13652734 (+)
G2298408 NA non-coding downstream 44981 13667450 ~ 13667672 (+)
G2296450 NA other upstream 1704077 11915196 ~ 11977297 (+)
LOC110487932 LOC106570557 other upstream 1713551 11906205 ~ 11910366 (+)
G2296278 NA other upstream 2057627 11563547 ~ 11564590 (+)
G2296150 LOC106570575 other upstream 2331914 11285493 ~ 11290303 (+)
LOC110487904 snrpd1 other upstream 3100910 10509464 ~ 10521398 (+)
G2298390 NA other downstream 7593 13630062 ~ 13630795 (+)
G2298739 NA other downstream 130798 13753267 ~ 13753517 (+)
G2298884 NA other downstream 391763 14014232 ~ 14015587 (+)
G2299191 NA other downstream 681267 14303736 ~ 14304232 (+)

Expression


Co-expression Network