G2298874


Basic Information

Item Value
gene id G2298874
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 13989009 ~ 13995301 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2629736
ATTCAGCAAACTCCCTGAACTCCGACATCAGACATcagttgtgtcccaaatagcacccattccctatatagtgcactaccattaACCAGAGCCGTATGGGCCctgtttaaaagtagtgcactataaagtggataggttgccatttgggacgtatccaTCACTTGATGAAGCTCCTTTTGGCATGGTTGTCCACATTCACCTCAAATACCCTACTTTCCCTGGCAATACCTCATTTTACTAACTTAGCCCTCCTGTCCCTCTACACTGAaatcctctacactagatacagtgtagtgactgtagtcctctacactagatacagtaactgtagtcctctacactagatacagtacagtaactgtagtcctcaacactagatacagtaactgtagtcctctacactagatacagtaactgtagtcctctacactagatacagtacagtaactgtagtcctctacactagatacagtaactgtagtcctctacactagatacagtaactgtagtcctctacaccagatacagtacagtaactgtagtcctctacactagatacagtaactgttgtcctctacactagatacagtacagtaactgtagtcctctacactagatacagtacagtaactgtagtcctctacactagatacagtaactgtagtcctctacaccagatacagtacagtaactgtagtcctctacactagatacagtaactgtagtcctctacaccagatacagtacagtaactgtagtcctctacactagatacagtaactgttgtcctctacactagatacagtacagtaactgtagtcctctacactagatacagtacagtaactgtagtcctctacactagatacagtacagtaactgtagtcctctacactagatacagtacagtaactgtagtcctctacaccagatacagtacagtaactgtagtcctctacactagatacagtgactgtagtcctctacactagatacagtacagtaactgtagtcctctacactagatacagtaactgtagtcctctacactagatacagtacagtaactgtagtcctctacactagatacagtacagtaactgtagtcctctacactagatacagtaactgtagtcctctacactagatacagtaactgtagtcctctacactagatacagtaactatagtcctctacattagatacagtaactgtagtcctctacactagatacagtaactgtagtcctctacactagatacagtaactgtagtcctctacattagatacagtaactgtagtcctctacactagatacagtaactgtagtcctctacactagatacagtaactgtagtcctctacactagatacagtaactgtagtcctctacactagatacagtacagtaactgtagtcctctacactagatacattacagtaactgtagtcctctacactagatacagtaactgtagtcctctacactagatacagtaactgtagtcctctacactagatacagtaactgtagtcctctacactagatacagtacagtaactgtagtcc
>TU2629738
actagatacagtacagtaactgtagtcctctacactagatacagtacagtaactgtagtcctctacactagatacagtaactgttgtcctctacactagatacagtaactgtagtcctctacactagatacagtacagtaactatagtcctctacactagatacagtacagtaactgtagtcctctacactagatacagtaactgtagtcctctacactagatacagtacagtaactatagtcctctacactagatacagtacagtaactgtagtcctctacactagatacagtaactgtTGTCCTCTACGctagatacagtaactgtagtcctctacactagatacagtaactgtagtcctctacactagatacagtaactgtagtcctctacactagatacagtacagtaactgtagtcctctacactagatacagtacagtaactgtagtcctctacactagatacagtacagtaactgtagtcctctacactagatacagtaactgtagtcctctacactagatacagtacagtaactgtagtcctctacactagatacagtaactgttgtcctctacactagatacagtaactgtagtcctctacactagatacagtacagtaactgtagtcctctacaccaGATACAGTGaagtaactgtagtcctctacactagatacggtaactgtagtcctctacactagatacagtaactgtagtcctctacactagatacagtgactgtagtcctctacactagatacagtacagtaactgtagtcctctacactagatacagtacagtaactgtagtcctctacattagatacagtaactgtagtcctctacactagatacagtaactgtagtcctctacaccagatacagtaactgtagtcctctacaccagatacagtacagtaactgtagtcctctacactagatacagtgactgtagtcctctacacgaGATACagtaactgtagtcctctacactagatacagtaactgtaatcctctacactagatacagtaactgtagtcctctacactagatacagtacagtaactgtagtcctctacactagatacagtaactgtagtcctctacattagatacagtaactgtagtcctctacactagatacagtaactgtagtcctctacactagatacagtaactgtagtcctctacactagatacagtaactgtagtcctctacactagatacagtacagtaactgtagtcctctacactagatacattacagtaactgtagtcctctacactagatacagtaactgtagtcctctacactagatacagtaactgtagtcctctacactagatacagtaactgtagtcctctacactagatacagtacagtaactgtagtcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2629736 False 1572 lncRNA 0.40 4 13989009 13995301
TU2629738 True 1406 lncRNA 0.39 2 13992892 13995301

Neighbor

gene id symbol gene type direction distance location
LOC110487938 adgrb2 coding upstream 264020 13507588 ~ 13724989 (+)
LOC118946451 adgrb2 coding upstream 497421 13274220 ~ 13491588 (+)
LOC110487937 LOC106588828 coding upstream 1516761 12425043 ~ 12472248 (+)
col8a2 LOC106570550 coding upstream 1574860 12322871 ~ 12414149 (+)
LOC110487924 LOC106570549 coding upstream 1835272 12146678 ~ 12153737 (+)
LOC110487944 LOC106570514 coding downstream 149700 14145001 ~ 14175807 (+)
LOC110487945 cbx3 coding downstream 183018 14178319 ~ 14187277 (+)
LOC118936620 LOC106570515 coding downstream 212072 14207166 ~ 14225549 (+)
LOC110487946 LOC106570515 coding downstream 247456 14242757 ~ 14260096 (+)
LOC110487954 NA coding downstream 427151 14422452 ~ 14424543 (+)
G2298847 NA non-coding upstream 68915 13918416 ~ 13920094 (+)
G2298835 NA non-coding upstream 103896 13884756 ~ 13885113 (+)
G2298752 NA non-coding upstream 223601 13765182 ~ 13765408 (+)
G2298750 NA non-coding upstream 224014 13764713 ~ 13764995 (+)
G2298748 NA non-coding upstream 224872 13761972 ~ 13764137 (+)
G2298882 NA non-coding downstream 16253 14011554 ~ 14012175 (+)
G2298916 NA non-coding downstream 83158 14078459 ~ 14079886 (+)
G2299161 NA non-coding downstream 268784 14264085 ~ 14264524 (+)
G2299166 NA non-coding downstream 278545 14273846 ~ 14274111 (+)
G2299172 NA non-coding downstream 282632 14277933 ~ 14278233 (+)
G2298739 NA other upstream 235492 13753267 ~ 13753517 (+)
G2298390 NA other upstream 358214 13630062 ~ 13630795 (+)
G2296450 NA other upstream 2070869 11915196 ~ 11977297 (+)
LOC110487932 LOC106570557 other upstream 2080343 11906205 ~ 11910366 (+)
G2296278 NA other upstream 2424419 11563547 ~ 11564590 (+)
G2298884 NA other downstream 18931 14014232 ~ 14015587 (+)
G2299191 NA other downstream 308435 14303736 ~ 14304232 (+)
G2299272 NA other downstream 423360 14418661 ~ 14419677 (+)
LOC110489442 LOC106570521 other downstream 518708 14513613 ~ 14517978 (+)

Expression


Co-expression Network