G2299309


Basic Information

Item Value
gene id G2299309
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 14473349 ~ 14474930 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2630250
GCCCCTAACCATAATTACCATTAGCACTATCACAAATAGGCTACCAGCACAGCAGTGCCAATTATGGAAGCTACTATGGCTAATGAAAAAAATGATACACTATTAAGTAGAAAATAATAAGCTAACAAATACAGCATAATGTACAGAAGCCGTTGAGTTTCCTCAGAAAAGTGTGAGATACCGCGAGAGAAAAACATCCAATTAATAGATCATTTAATAGATAGTTTAAACATGGGGTTGTTTATTTCATCATTCAGACACATAGATCACGTTCTAATCAAATTTGAAAGCAGAAATAAAACTCGTTTTCAAAAACCGAACAACAATGGACAAGCAAATACAATACAAACCAACGGCAAACCTAAGTCTGGATACAATATGATAAAATCTGAACTAGTATGAAGAGAGGAAATCTCGGCGTAACACGTTGTAACACTTCACAGACATGTTCTCGAACCTTGCCCTACCATAGCTTTAGAGAACCGTGATAGGATAGCCCACAGAATTACGTGTTCTATTTATTACCGTCGAATAAAACTGAAAGCTAGGCCAACACCTTACAGGCCACAGGCGATTGACTACTGCTAAATAATCCACTCCAGCCTGTTTTCCCATACTGAAAAAAAACGTTATAACTCACACTAATAACTGAAAAGATAGGCGTTCATCTACCTGGAAAGCATTGGGCCTACCACTGTGCATAATCAGATAATGCTCGGTGAAAATATATTAGAGACATTAGAACAACATAAAGAGGCTAGTGGATAAATAAAGGCCATGCGCACTTaaacacagcacagacagcaacCTTCAAAAGAAAAAAAGGACACACAAGTGAATGCAATAGCACTTTAAGGCTGTAAACTAAATCAGGGTGTGTTTAACACGGACCCAGTATACCGCAGGGGTTATTCACTTATTTTTCCCGCAGATAACAGCTTGTCTGGCGGATCTAAATATCGCCATAAAGCCCTTCCCGTCTTTTGTGTCCGGGCTGTATTGCGCAGCGGAAGCATCCGGTTCAATTGCCCACCGGAGCGCCGCTGAGGTCGCTGTTGCACACTCAACTTCCCCTTCCACTACAATGCAGTGGTCGTAACCGAGGCCTTGTCTGGCGTCATTGCGTCACGAGTGAGAGAAAACATACTTATCTATACGCAAAATCCAAGTCCAACTCGCCTATGGCTGAGCTTTTACCAAGATAAATATAGGACGCAGGCAATTCAGGGGCTTAATTTGACGACGAAAATAACAAGTGGAGTTTGTATAAATATTACTGACGATATGTTAAGATAAATACACGACAGTAAGTATATCTCAACAGCTAAAGGAAATAAGAAATGTCCTATTGTTTATTCATATATTTATGTAAAAACAAATAACACTCCATCCTATTACATACAATTCAATCAGATTGCACGTGTCCCAGACTACGTTGACTGAAGTTTCGATGTATTAAACTGGGCCAATTCAGACAGTTTCGTGTTGTAGAGGTAGAAAATAGATCCCAACAACATGAAACTACCTAAACCACTCCACAGTCCGCTCCAGGCCTCAAGACGCACAGCAGCCAATGCATAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2630250 True 1582 lncRNA 0.40 1 14473349 14474930

Neighbor

gene id symbol gene type direction distance location
LOC110487953 NA coding upstream 35438 14435905 ~ 14437911 (+)
LOC110487954 NA coding upstream 48806 14422452 ~ 14424543 (+)
LOC110487946 LOC106570515 coding upstream 213253 14242757 ~ 14260096 (+)
LOC118936620 LOC106570515 coding upstream 247800 14207166 ~ 14225549 (+)
LOC110487945 cbx3 coding upstream 286072 14178319 ~ 14187277 (+)
LOC110489442 LOC106570521 coding downstream 38683 14513613 ~ 14517978 (+)
LOC110489384 LOC106570524 coding downstream 107994 14582924 ~ 14638903 (+)
LOC110487967 LOC106570526 coding downstream 212982 14687912 ~ 14726969 (+)
LOC110487969 LOC106570528 coding downstream 286182 14761112 ~ 14793523 (+)
LOC110487970 LOC106570529 coding downstream 323015 14797945 ~ 14807978 (+)
G2299308 NA non-coding upstream 806 14472199 ~ 14472543 (+)
G2299302 NA non-coding upstream 8335 14463433 ~ 14465014 (+)
G2299276 NA non-coding upstream 49534 14423463 ~ 14423815 (+)
G2299275 NA non-coding upstream 57006 14415659 ~ 14416343 (+)
G2299315 NA non-coding downstream 3957 14478887 ~ 14479095 (+)
G2299316 NA non-coding downstream 7287 14482217 ~ 14482422 (+)
G2299310 NA non-coding downstream 13509 14488439 ~ 14491064 (+)
G2299391 NA non-coding downstream 40702 14515632 ~ 14515861 (+)
G2299450 NA non-coding downstream 125650 14600580 ~ 14601237 (+)
G2299272 NA other upstream 53672 14418661 ~ 14419677 (+)
G2299191 NA other upstream 169117 14303736 ~ 14304232 (+)
G2298884 NA other upstream 457762 14014232 ~ 14015587 (+)
G2298739 NA other upstream 719832 13753267 ~ 13753517 (+)
G2299643 trmt13 other downstream 548703 15023633 ~ 15028263 (+)
LOC110487981 LOC106570537 other downstream 657337 15131738 ~ 15188805 (+)
G2300167 NA other downstream 942296 15417226 ~ 15417507 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014003 mir196a-2 non-coding NC_007130.7 CM002903.2 19747619 ~ 19747694 (+)
eurasian perch (Perca fluviatilis) G145964 NA non-coding NC_053125.1 CM020922.1 24727481 ~ 24820049 (-)
tiger barb (Puntius tetrazona) G133394 NA non-coding NC_056717.1 CM032086.1 15763950 ~ 15764619 (+)
mexican tetra (Astyanax mexicanus) G300736 LOC108425159 non-coding NW_019172832.1 APWO02000050.1 1461645 ~ 1465293 (-)