XLOC_004186 (igsf21a)


Basic Information

Item Value
gene id XLOC_004186
gene name igsf21a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 28642913 ~ 29082429 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008008
TGGGGAAAAAAATCCAGCAGGAATAAATCGGCTTAGTGGACAGAATTAGAGGGGAAGGGTTTGGAGCCAGGGTAGGATTAAGGAAAATTGTGTGAAATAAAAAGCGAGTGATCACGAGTGACTCTGTTCGTGTCTGTTTCTGGAGGgagggaggagagagagagagagagaaagagagagagagaaagacagagtgtgtgtgtgagaaagattTTCATCCAAATCCATATCTATTTTTTAATCCTCGTCTGTGCGTAAACGCTGGTTACAGCCTTCGCGAGGAGACTATTTCGCAATGCAACGCTTTTAATAATCTTTACGCAATCTTCACGCAATCATCTTTGCATCCGTTGAAGTGCGCATTTGTTTTAAACTTCAATCTTCCCTCCGACACACTTGGACAGCATCATGACCAGTTTGTGGGATCGCATCCCGTTGGAATGGTGGGAATTACGCGGCGAGCTGCCGGAGAGCATGTAAACGCAAATGGAGTTTGGGATTTATTGCAAAATATGGGAAAGATGACCGTCTTGTCTTTGTGTTTTCTCTTGTGCGCTGATCTACTGCAAGTAGCTGTTGGATATCTAACTGTAACGATAGAGCCATTGCTACCTGTTGTTGTGGGAGAAGCGGTGACTCTAAAGTGCAACTTCAAGACAGATGGAAGATTACGAGAGATCGTATGGTACAGGGTTACTGACGGGGGCACCATTAAGCAGAGGATTTTTACGTACGATGCTATGTTCAATACAAATTACTCTCATATGGAGGATTACCGCAGACGGGAAGACCTGGTGTATCAGTCGACGGTCCGgCTCCCAGAGGTGCGGATCTCAGACAATGGCCCTTATGAATGCCATGTAGGAATCTATGACCGAGCGACACGAGAGAAGGTCGTCCTGGCATCAGGGAACGTCCTGCTTACGGTCATGTCTCCACCAAACAATATCTCAGTGCTGGCAGAAAACACTCCAGCGCCGTTTAGTCGATATCAGGCCCAAAACCTCACTCTGATCTGCACTGCCAAAGGAGGAAAACCAGCTCCATCGGTGTACTTCAAGCGGGATGGAGAATTAATAGAAGTGATCTCCTACGTTTCACCCACCGTGGGATATGAAGGTGCCGGCTCAGCTGGAGTGCGAGGAGCAAGACCTCTGATCAGCAGAGATCTGGACGACACTAAGCTGAGGAAGTCTCTATCTCTGTTAGGTCCGGAGGGCAGGCCCGGACGCCTCAACACGGAGAGCCCGGGACGGAGCTATATGGCCAGACAACCCGGCCAAGAGCCCAGTCCAGCCACGGAGACCATCCCAGAGACAGTGGTCAGCCGTGAGTTTCCACGCTGGGTACAGAGCACAGACCCCCTGTACTTCTTCAGCAACATACACATCCCTCAGAGCGATGGGACAGTGCTGGTCCAGGCCAAGCTCACCTGGACGCTGAATCCACAGTTGGACAATGATGCCCTGTTTAGCTGCGAGGTCACGCACCCTGCGCTCTCTATGCCTATGCAGACTGAGGTCATACTGGCGGCTCCAAAAGGCCCCAAGCTTGTGATAAGCCCTACCAGGGCAAAGGTAGGGGATACGGTTCGTATCACCGTCCAAGGTTTCCAGGTAGGATCTCCTGGGaacgaTGTGTTTCCTGAGCCTTTGTACACCTGGACGCGGGTGGGTGGCAGACTGCTGGACGGCAGTGCAGAGAAGGATGGGAAGGAGCTGATACTGGAGCGAGTGCCTGCTGAACTCAACGGCTCCATGTACCGCTGCACGGCCCAAAATCCACTGGGctccactgacacacacacacgcctcatTGTTTTTGAAAACCCGAGTATGATGAAAAACACACAGAATCCAAACAaTGGAGCTTTTGGTTTGCACAAGCTTGGACTGATATGCCTGCCACTTATTCTCACAGTGACTGTTGAGCTGACGTGAATATCCTCGAttgaaccacacacaaacacacttcctctccaatcagacacacacacagacacacacaagcctTTCCAGACCGTTACTAAACCTACCTTGCTATCATCTGTGGGACATCCTGAACACCTCCCAACCCCCCAACAGGGAGCGCACCGCCCTtttttgtgaacaaaaaaaaagatccgctgattaaaaaaaataatagtaataataataatatgaaaataacatGCTGAATATGAGAACAAGCACCTCCTTATTGTCAACCCCTTTCAACAGacagtattgttttgttttttaatcattaaactTGCCTGCCAATTAAAGGAGACCTGTTTATTCAGAAAAGCAAACAGTGTTTGGGCATCGAGCTGGACTAAAACGTCGAGCGCTGGGTATTGGAGAACAGACTTTAAGGAACTGTGGCTCGCTGACAATGCAGACTTTCGTTTCAACTCCGACTAGCTATCCTGGAATTCCCTTATACCGCACACTGGCACAACAGGACTCAAATGCGCCCCTTTTTTAAAGAACATGTTTTACGCCATTTGTGTTTTTTGATCACAGTATTTTTTTCCGTTTTTGTTTTCTTGAATGGCTCTCGGCTggaatgtaacaaaaaaaaaagagacaatacTAAACGTCCTGTGACATTTTATCGCAAAGAAATGGAAGATCCTCTTTTTAAGTGTATTTTGTGTACATCCCTGTAAATAATGAGAAGTATATTACAgagcagaaaacaaaaaaataacaataataattaatagaagTTTGGGGGGAAAGATGCAAAGGAGGCGGGAGGGTATAGCAGATAATGGCTTTATTGCGTGTCTGGTCATCCCCAACCCAAATCCAACCCAGGCTTTTAGAGAAACGGTGAAATCAGTGGCCTTTCTACTATCTGATTTCATGTGTTCAGTATCTATGATGACCATCCGTGTGACTGTTTTTTTCAACCGCAGAGGAAAGACCGCAGCTTTTCTCCGGGGTTGTTGGTGCATGTGACGTTCGACGATGATTTCCCCTCCTCATCTGTTTGTCACCGACCTGTCCTTAAGTTGTTTTCGTCGCATATTCAGTGACCTGCATCGTGTACAGTCCTTCTCTCTAATCTAACAGTTACTGCTAGGATCATGTTAGCCACCATTACCACCCCTCCATCCCCGAAAGGAAGCTCAAGTGAAGCCAAGTGTAAACAGGGTTGTTGCATTTGTTTCATATCACCTGTATTAAAAAATGGAGATGATCAACTTAA
>TCONS_00008009
GTAAACGCTGGTTACAGCCTTCGCGAGGAGACTATTTCGCAATGCAACGCTTTTAATAATCTTTACGCAATCTTCACGCAATCATCTTTGCATCCGTTGAAGTGCGCATTTGTTTTAAACTTCAATCTTCCCTCCGACACACTTGGACAGCATCATGACCAGTTTGTGGGATCGCATCCCGTTGGAATGGTGGGAATTACGCGGCGAGCTGCCGGAGAGCATGTAAACGCAAATGGAGTTTGGGATTTATTGCAAAATATGGGAAAGATGACCGTCTTGTCTTTGTGTTTTCTCTTGTGCGCTGATCTACTGCAAGTAGCTGTTGGATATCTAACTGTAACGATAGAGCCATTGCTACCTGTTGTTGTGGGAGAAGCGGTGACTCTAAAGTGCAACTTCAAGACAGATGGAAGATTACGAGAGATCGTATGGTACAGGGTTACTGACGGGGGCACCATTAAGCAGAGGATTTTTACGTACGATGCTATGTTCAATACAAATTACTCTCATATGGAGGATTACCGCAGACGGGAAGACCTGGTGTATCAGTCGACGGTCCGgCTCCCAGAGGTGCGGATCTCAGACAATGGCCCTTATGAATGCCATGTAGGAATCTATGACCGAGCGACACGAGAGAAGGTCGTCCTGGCATCAGGGAACGTCCTGCTTACGGTCATGTCTCCACCAAACAATATCTCAGTGCTGGCAGAAAACACTCCAGCGCCGTTTAGTCGATATCAGGCCCAAAACCTCACTCTGATCTGCACTGCCAAAGGAGGAAAACCAGCTCCATCGGTGTACTTCAAGCGGGATGGAGAATTAATAGAAGTGATCTCCTACGTTTCACCCACCGTGGGATATGAAGGTGCCGGCTCAGCTGGAGTGCGAGGAGCAAGACCTCTGATCAGCAGAGATCTGGACGACACTAAGCTGAGGAAGTCTCTATCTCTGTTAGGTCCGGAGGGCAGGCCCGGACGCCTCAACACGGAGAGCCCGGGACGGAGCTATATGGCCAGACAACCCGGCCAAGAGCCCAGTCCAGCCACGGAGACCATCCCAGAGACAGTGGTCAGCCGTGAGTTTCCACGCTGGGTACAGAGCACAGACCCCCTGTACTTCTTCAGCAACATACACATCCCTCAGAGCGATGGGACAGTGCTGGTCCAGGCCAAGCTCACCTGGACGCTGAATCCACAGTTGGACAATGATGCCCTGTTTAGCTGCGAGGTCACGCACCCTGCGCTCTCTATGCCTATGCAGACTGAGGTCATACTGGCGGCTCCAAAAGGCCCCAAGCTTGTGATAAGCCCTACCAGGGCAAAGGTAGGGGATACGGTTCGTATCACCGTCCAAGGTTTCCAGaacgaTGTGTTTCCTGAGCCTTTGTACACCTGGACGCGGGTGGGTGGCAGACTGCTGGACGGCAGTGCAGAGAAGGATGGGAAGGAGCTGATACTGGAGCGAGTGCCTGCTGAACTCAACGGCTCCATGTACCGCTGCACGGCCCAAAATCCACTGGGctccactgacacacacacacgcctcatTGTTTTTGAAAACCCGAGTATGATGAAAAACACACAGAATCCAAACAaTGGAGCTTTTGGTTTGCACAAGCTTGGACTGATATGCCTGCCACTTATTCTCACAGTGACTGTTGAGCTGACGTGAATATCCTCGAttgaaccacacacaaacacacttcctctccaatcagacacacacacagacacacacaagcctTTCCAGACCGTTACTAAACCTACCTTGCTATCATCTGTGGGACATCCTGAACACCTCCCAACCCCCCAACAGGGAGCGCACCGCCCTtttttgtgaacaaaaaaaaagatccgctgattaaaaaaaataatagtaataataataatatgaaaataacatGCTGAATATGAGAACAAGCACCTCCTTATTGTCAACCCCTTTCAACAGacagtattgttttgttttttaatcattaaactTGCCTGCCAATTAAAGGAGACCTGTTTATTCAGAAAAGCAAACAGTGTTTGGGCATCGAGCTGGACTAAAACGTCGAGCGCTGGGTATTGGAGAACAGACTTTAAGGAACTGTGGCTCGCTGACAATGCAGACTTTCGTTTCAACTCCGACTAGCTATCCTGGAATTCCCTTATACCGCACACTGGCACAACAGGACTCAAATGCGCCCCTTTTTTAAAGAACATGTTTTACGCCATTTGTGTTTTTTGATCA
>TCONS_00008010
TCTGCAGGATATCTAACTGTAACGATAGAGCCATTGCTACCTGTTGTTGTGGGAGAAGCGGTGACTCTAAAGTGCAACTTCAAGACAGATGGAAGATTACGAGAGATCGTATGGTACAGGgCTCCCAGAGGTGCGGATCTCAGACAATGGCCCTTATGAATGCCATGTAGGAATCTATGACCGAGCGACACGAGAGAAGGTCGTCCTGGCATCAGGGAACGTCCTGCTTACGGTCATGTCTCCACCAAACAATATCTCAGTGCTGGCAGAAAACACTCCAGCGCCGTTTAGTCGATATCAGGCCCAAAACCTCACTCTGATCTGCACTGCCAAAGGAGGAAAACCAGCTCCATCGGTGTACTTCAAGCGGGATGGAGAATTAATAGAAGTGATCTCCTACGTTTCACCCACCGTGGGATATGAAGGTGCCGGCTCAGCTGGAGTGCGAGGAGCAAGACCTCTGATCAGCAGAGATCTGGACGACACTAAGCTGAGGAAGTCTCTATCTCTGTTAGGTCCGGAGGGCAGGCCCGGACGCCTCAACACGGAGAGCCCGGGACGGAGCTATATGGCCAGACAACCCGGCCAAGAGCCCAGTCCAGCCACGGAGACCATCCCAGAGACAGTGGTCAGCCGTGAGTTTCCACGCTGGGTACAGAGCACAGACCCCCTGTACTTCTTCAGCAACATACACATCCCTCAGAGCGATGGGACAGTGCTGGTCCAGGCCAAGCTCACCTGGACGCTGAATCCACAGTTGGACAATGATGCCCTGTTTAGCTGCGAGGTCACGCACCCTGCGCTCTCTATGCCTATGCAGACTGAGGTCATACTGG

Function

symbol description
igsf21a Predicted to be involved in heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules and homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in adherens junction. Is expressed in brain; pectoral fin musculature; and retina. Orthologous to human IGSF21 (immunoglobin superfamily member 21).

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0007157 heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules biological_process
GO:0005912 adherens junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050809-118 Predicted to be involved in heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules and homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in adherens junction. Is expressed in brain; pectoral fin musculature; and retina. Orthologous to human IGSF21 (immunoglobin superfamily member 21).

Ensembl:

ensembl_id ENSDARG00000031049

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008008 False 3198 mRNA 0.47 10 28642913 29082429
TCONS_00008009 False 2235 mRNA 0.49 10 28643607 29082175
TCONS_00008010 True 836 mRNA 0.54 4 28684668 28911172

Neighbor

gene id symbol gene type direction distance location
XLOC_004185 klhdc7a coding downstream 3415 28633717 ~ 28639498 (-)
XLOC_004184 dhrs3b coding downstream 28305 28590733 ~ 28614608 (-)
XLOC_004183 BX649345.1 coding downstream 117417 28522364 ~ 28525496 (-)
XLOC_004182 NA coding downstream 120569 28513742 ~ 28522344 (-)
XLOC_004181 NA coding downstream 218772 28418876 ~ 28424141 (-)
XLOC_004187 NA coding upstream 2937 29085366 ~ 29088626 (-)
XLOC_004188 NA coding upstream 17498 29099927 ~ 29319919 (-)
XLOC_004189 arhgef10la coding upstream 248713 29331142 ~ 29563437 (-)
XLOC_004190 NA coding upstream 455553 29537982 ~ 29544989 (-)
XLOC_004191 chd5 coding upstream 492314 29574743 ~ 29658396 (-)
XLOC_004063 CR854846.1 misc downstream 12515235 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 15951222 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 16021146 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 16051617 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 16129651 12512966 ~ 12513262 (-)
XLOC_004180 NA non-coding downstream 442409 28196957 ~ 28200504 (-)
XLOC_004174 NA non-coding downstream 833198 27800859 ~ 27809715 (-)
XLOC_004193 NA non-coding upstream 652149 29734578 ~ 29737247 (-)
XLOC_004198 CU652893.1 non-coding upstream 878685 29961114 ~ 29961901 (-)

Expression


Co-expression Network