G2299541


Basic Information

Item Value
gene id G2299541
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 14822575 ~ 14824876 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2630528
aggggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaaggtgagaaacacagcctagtttaaaggtgagaaacacagcctagtttaaaggggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaagtggagaaacacagcctagtttaaagggaatagaaacacagcctagtttaaaggggagaaacacagcctagtttaaagggaatagaaacacagcctagtttaaaggggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaagggaatagaaacacagcctagtttaaaggggagaaacacagcctagtttaaagtggagaaacacagcctagtttaaaggggagagaaacacagcctagtttaaaggggagagaaacacagcctagtttaaaggggagaaacacagcctagtttaaagggaatagaaacacagcctagtttaaagtggagaaacacagcctagtttaaaggggagaaacacaggctagtttaaaggggagaaacacagcctagtttaaagggaatagaaacacagcctagtttaaaggggagaaacacagcctagtttaaaggggagaaacacattctagtttaaaggggagagaaacacagcctagtttaaaggggagagaaacacagcctagtttagaggggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaagggaatagaaacacagcctagtttaaaggggagaaacacagcctagtttaaagtggagaaacacagcctagtttaaaggtgagaaacacagcctagtttagaggggagaaacacagcctagtttaaaggggagaaacacagcctagtttagaggggagaaacacagcctagtttaaaggggagaaatacagcctagtttaaagggaatagaaacacagcctagtttaaaggggagaaacacagcctagtttaaagtggagaaacacagcctagtttaaaggtgagaaacacagcctagtttagaggggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaagtggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaagtggagaaacacagcctagtttaaagtggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaagtggagaaacacagcctagtttaaagtggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaaggagagaaacacagcctagtttaaaggggagaaacacagcctagtttaaaggggagaaacagcctagtttaaagtggagtctgtctct
>TU2630530
aggggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaaggtgagagaaacacagcctagtttaaaggggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaaggggagaaaaacagcctagtttaaaggggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaaggggagagaaacacagcctagtttaaaggggagaaacacagcctagtttaaagggaatagaaacacagcctagtttaaagtggagaaacacagcctagtttaaaggggagaaacacaggctagtttaaaggggagaaacacagcctagtttaaagggaatagaaacacagcctagtttaaaggggagaaacacagcctagtttaaaggggagaaacacattctagtttaaaggggagagaaacacagcctagtttaaaggggagagaaacacagcctagtttagaggggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaagggaatagaaacacagcctagtttaaaggggagaaacacagcctagtttaaagtggagaaacacagcctagtttaaaggtgagaaacacagcctagtttagaggggagaaacacagcctagtttaaaggggagaaacacagcctagtttagaggggagaaacacagcctagtttaaaggggagaaatacagcctagtttaaagggaatagaaacacagcctagtttaaaggggagaaacacagcctagtttaaagtggagaaacacagcctagtttaaaggtgagaaacacagcctagtttagaggggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaagtggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaagtggagaaacacagcctagtttaaagtggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaagtggagaaacacagcctagtttaaagtggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaaggagagaaacacagcctagtttaaaggggagaaacacagcctagtttaaaggggagaaacagcctagtttaaagtggagtctgtctct
>TU2630531
aggggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaaggtgagaaacacagcctagtttaaaggtgagaaacacagcctagtttaaaggggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaagtggagaaacacagcctagtttaaagggaatagaaacacagcctagtttaaaggggagaaacacagcctagtttaaaggggagagaaacacagcctagtttaaaggggagaaacacagcctagtttaaagggaatagaaacacagcctagtttaaagtggagaaacacagcctagtttaaaggggagaaacacaggctagtttaaaggggagaaacacagcctagtttaaagggaatagaaacacagcctagtttaaaggggagaaacacagcctagtttaaaggggagaaacacattctagtttaaaggggagagaaacacagcctagtttaaaggggagagaaacacagcctagtttagaggggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaagggaatagaaacacagcctagtttaaaggggagaaacacagcctagtttaaagtggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaaggagagaaacacagcctagtttaaaggggagaaacacagcctagtttaaaggggagaaacagcctagtttaaagtggagtctgtctct
>TU2630533
aggggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaaggtgagaaacacagcctagtttaaaggtgagaaacacagcctagtttaaaggggagaaacacagcctagtttaaaggggagaaacacagcctagtttaaagtggagagaaacacagcctagtttaaaggggagaaacacagcctagtttaaaggggagaaacagcctagtttaaagtggagtctgtctct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2630528 False 1561 lncRNA 0.42 3 14822575 14824876
TU2630530 False 1305 lncRNA 0.43 2 14822575 14824876
TU2630531 False 803 lncRNA 0.42 3 14822575 14824876
TU2630533 True 266 lncRNA 0.43 2 14822575 14824876

Neighbor

gene id symbol gene type direction distance location
LOC110487970 LOC106570529 coding upstream 14597 14797945 ~ 14807978 (+)
LOC110487969 LOC106570528 coding upstream 29052 14761112 ~ 14793523 (+)
LOC110487967 LOC106570526 coding upstream 95606 14687912 ~ 14726969 (+)
LOC110489384 LOC106570524 coding upstream 183673 14582924 ~ 14638903 (+)
LOC110489442 LOC106570521 coding upstream 304597 14513613 ~ 14517978 (+)
LOC110487973 LOC106570532 coding downstream 70800 14895676 ~ 14908383 (+)
LOC110487974 LOC106570531 coding downstream 87441 14912317 ~ 14918635 (+)
LOC110487975 LOC106570533 coding downstream 108767 14933643 ~ 14972153 (+)
LOC118946541 NA coding downstream 192148 15017024 ~ 15017839 (+)
LOC118946527 NA coding downstream 194662 15019538 ~ 15023593 (+)
G2299536 LOC106570530 non-coding upstream 5299 14814211 ~ 14817276 (+)
G2299531 NA non-coding upstream 33831 14788308 ~ 14788744 (+)
G2299521 NA non-coding upstream 68121 14754139 ~ 14754454 (+)
G2299520 NA non-coding upstream 71998 14750043 ~ 14750577 (+)
G2299518 NA non-coding upstream 74829 14747526 ~ 14747746 (+)
G2299577 NA non-coding downstream 54943 14879819 ~ 14880418 (+)
G2299601 NA non-coding downstream 96519 14921395 ~ 14922723 (+)
G2299609 NA non-coding downstream 105603 14930479 ~ 14930721 (+)
G2299610 NA non-coding downstream 106010 14930886 ~ 14931294 (+)
G2299272 NA other upstream 402898 14418661 ~ 14419677 (+)
G2299191 NA other upstream 518343 14303736 ~ 14304232 (+)
LOC118936620 LOC106570515 other upstream 598698 14207166 ~ 14225549 (+)
G2299643 trmt13 other downstream 198757 15023633 ~ 15028263 (+)
LOC110487981 LOC106570537 other downstream 307391 15131738 ~ 15188805 (+)
G2300167 NA other downstream 592350 15417226 ~ 15417507 (+)
G2300406 NA other downstream 1055805 15880681 ~ 15882161 (+)
dss1 NA other downstream 1378597 16203473 ~ 16252597 (+)

Expression


Co-expression Network