G2299601


Basic Information

Item Value
gene id G2299601
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 14921395 ~ 14922723 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2630601
cccttaagttaatactttgtagcgccaccttttgctgcgattacagctgtaagtcgcttggggtatgtctctatcagttttgcacatcgagagactgaacatttttccctttcctccttgcaaaacagctcgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccacagattctcgattggattcaggtctggactttgactttgccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcgtgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagctgtgttgcttttacgccaaacataacgttttgcattgttgccaaaaagttcaatttcggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtgtcttgtggcaaactttaaacaacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcatatggacagagtctcccacctcagctgtagatctctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgaagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttcaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttaacggaccaatgagactatcacagtgcaggtgcatttatacggagacttgattacacacaggtggattgtatttatcatcattagtcatttaggtcaacattggatcattcagagatcctaactgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataattttgcacgcccaatttttcagtttttgatttgttaaaaaagtttgaaatatccaataaatgtcgttccacttcatgattgtgtcccacttgttgttgattcttcacaaaaaaatacagt

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2630601 True 1329 lncRNA 0.42 1 14921395 14922723

Neighbor

gene id symbol gene type direction distance location
LOC110487974 LOC106570531 coding upstream 2760 14912317 ~ 14918635 (+)
LOC110487973 LOC106570532 coding upstream 13012 14895676 ~ 14908383 (+)
LOC110487970 LOC106570529 coding upstream 113417 14797945 ~ 14807978 (+)
LOC110487969 LOC106570528 coding upstream 127872 14761112 ~ 14793523 (+)
LOC110487967 LOC106570526 coding upstream 194426 14687912 ~ 14726969 (+)
LOC110487975 LOC106570533 coding downstream 10920 14933643 ~ 14972153 (+)
LOC118946541 NA coding downstream 94301 15017024 ~ 15017839 (+)
LOC118946527 NA coding downstream 96815 15019538 ~ 15023593 (+)
LOC110487978 oxnad1 coding downstream 112676 15035150 ~ 15046389 (+)
LOC110487981 LOC106570537 coding downstream 209015 15131738 ~ 15188805 (+)
G2299577 NA non-coding upstream 40977 14879819 ~ 14880418 (+)
G2299541 NA non-coding upstream 96519 14822575 ~ 14824876 (+)
G2299536 LOC106570530 non-coding upstream 104119 14814211 ~ 14817276 (+)
G2299531 NA non-coding upstream 132651 14788308 ~ 14788744 (+)
G2299521 NA non-coding upstream 166941 14754139 ~ 14754454 (+)
G2299609 NA non-coding downstream 7756 14930479 ~ 14930721 (+)
G2299610 NA non-coding downstream 8163 14930886 ~ 14931294 (+)
G2299640 NA non-coding downstream 75051 14997774 ~ 14998042 (+)
G2299641 NA non-coding downstream 75496 14998219 ~ 14998550 (+)
LOC110489384 LOC106570524 other upstream 282492 14582924 ~ 14638903 (+)
LOC110489442 LOC106570521 other upstream 405961 14513613 ~ 14517978 (+)
G2299272 NA other upstream 501718 14418661 ~ 14419677 (+)
G2299191 NA other upstream 617163 14303736 ~ 14304232 (+)
LOC118936620 LOC106570515 other upstream 697518 14207166 ~ 14225549 (+)
G2299643 trmt13 other downstream 100910 15023633 ~ 15028263 (+)
G2300167 NA other downstream 494503 15417226 ~ 15417507 (+)
G2300406 NA other downstream 957958 15880681 ~ 15882161 (+)
dss1 NA other downstream 1280750 16203473 ~ 16252597 (+)

Expression


Co-expression Network