G2299643 (trmt13)


Basic Information

Item Value
gene id G2299643
gene name trmt13
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 15023633 ~ 15028263 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2630658
GCCAGAGTTTGTTGGTAAACAGCCTATAATGTAGGCATAATGATTAATCCTTTTATTTCTTTTTAttgaaaacaaacacaaaacaggCAGGTACAATGCACAAGTTACAATTACATCATCTTTCAATCAGTCAATTTCCAATGATGAATCCCATTTCTCCCAGTATTCCTGGCCTCTCTCATTCTGTGTTCTAAAGGTCATAGTAATGATGCCTATGTGAGATGGTGTGCTGCGGTGTGTTCTGCCGTCTTAAAAGAGGAGTCGTGCTGAGGGCCTGACCTTTTTTCACACATCTGGTTCACAGGGCAAAAGGAAAGGGGACATACAGGCTCTACAATGCattcggaagtattcagaccactcccCCTTTTTTTCATATTTGGTTACAATGTAtgcattttacaataaggctgtaattacatttttcccctcagcaatctacatataataccccataatgacaaagcaaaacagggttttatacatttttgcaaatgtattacaaattaaaaacagaaataccttatttacataagcattcagaccctttgctatgagacttgaaattgagctcaggtgcatcctgtttccattgatcatccttgagatatttctacaacttgatttctgcagcactctaccaatcagggctttatggtaaagtggccagacagatgcccctcctcagtaaaaggcacatgacagccacctggagtttgccaaaaggcaccttaaggactctgaccatgagaaacaagattatttggtctgatgaaaccaagattgaactctcaagcctgaatgccaagcgtcacgtctggaggaaacctggcaccatccctacagtgaagcatggtggcagcatcatgctgtggggatgtttttcagtggcagatactgggagactagtcaggaaagatgaacagagcaatgcaatgtacaaagagatccttgatgaaaacctgctccaaagtgctcaggacctcagaactGGGgcaatggttcaccttccaacagaacaacgaccctaagcacacagccaagacaacgcaggagtggcttcgggacaagtctctgaatgtccttgagtgtcccagccaaaGCCTGGATGTGAACcggattgaacatctctggagagacctgaaaatagctgcgcagcgacgctccccatccaacctgacagagcttgagaagatctgcagagaagaacagaagaaactccccaaatacaggtgtgccaagcttgtagcgtcatacccaagaagacttgaggctgtgaTCACtgtcaaagatgcttca
>TU2630662
GCCAGAGTTTGTTGGTAAACAGCCTATAATGTAGGCATAATGATTAATCCTTTTATTTCTTTTTAttgaaaacaaacacaaaacaggCAGGTACAATGCACAAGTTACAATTACATCATCTTTCAATCAGTCAATTTCCAATGATGAATCCCATTTCTCCCAGTATTCCTGGCCTCTCTCATTCTGTGTTCTAAAGGTCATAGTAATGATGCCTATGTGAGATGGTGTGCTGCGGTGTGTTCTGCCGTCTTAAAAGAGGAGTCGTGCTGAGGGCCTGACCTTTTTTCACACATCTGGTTCACAGGGCAAAAGGAAAGGGGACATACAGGCTCTACAATGCattcggaagtattcagaccactcccCCTTTTTTTCATATTTGGTTACAATGTAtgcattttacaataaggctgtaattacatttttcccctcagcaatctacatataataccccataatgacaaagcaaaacagggttttatacatttttgcaaatgtattacaaattaaaaacagaaataccttatttacataagcattcagaccctttgctatgagacttgaaattgagctcaggtgcatcctgtttccattgatcatccttgagatatttctacaacttgatttctgcagcactctaccaatcagggctttatggtaaagtggccagacagatgcccctcctcagtaaaaggcacatgacagccacctggagtttgccaaaaggcaccttaaggactctgaccatgagaaacaagattatttggtctgatgaaaccaagattgaactctcaagcctgaatgccaagcgtcacgtctggaggaaacctggcaccatccctacagtgaagcatggtggcagcatcatgctgtggggatgtttttcagtggcagatactgggagactagtcaggaaagatgaacagagcaatgcaatgtacaaagagatccttgatgaaaacctgctccaaagtgctcaggacctcagaactGGGgcaatggttcaccttccaacagaacaacgaccctaagcacacagccaagacaacgcaggagtggcttcgggacaagtctctgaatgtccttgagtgtcccagccaaaGCCTGGATGTGAACcggattgaacatctctggagagacctgaaaatagctgcgcagcgacgctccccatccaacctgacagagcttgagaagatctgcagagaagaacagaagaaactccccaaatacaggtgtgccaagcttgtagcgtc
>TU2630647
ACAATGCACAAGTTACAATTACATCATCTTTCAATCAGTCAATTTCCAATGATGAATCCCATTTCTCCCAGTATTCCTGGCCTCTCTCATTCTGTGTTCTAAAGGTCATAGTAATGATGCCTATGTGAGATGGTGTGCTGCGGTGTGTTCTGCCGTCTTAAAAGAGGAGTCGTGCTGAGGGCCTGACCTTTTTTCACACATCTGGTTCACAGGGCAAAAGGAAAGGGGACATACAGGCTCTACAATGCattcggaagtattcagaccactcccCCTTTTTTTCATATTTGGTTACAATGTAtgcattttacaataaggctgtaattacatttttcccctcagcaatctacatataataccccataatgacaaagcaaaacagggttttatacatttttgcaaatgtattacaaattaaaaacagaaataccttatttacataagcattcagaccctttgctatgagacttgaaattgagctcaggtgcatcctgtttccattgatcatccttgagatatttctacaacttgatttctgcagcactctaccaatcagggctttatggtaaagtggccagacagatgcccctcctcagtaaaaggcacatgacagccacctggagtttgccaaaaggcaccttaaggactctgaccatgagaaacaagattatttggtctgatgaaaccaagattgaactctcaagcctgaatgccaagcgtcacgtctggaggaaacctggcaccatccctacagtgaagcatggtggcagcatcatgctgtggggatgtttttcagtggcagatactgggagactagtcaggaaagatgaacagagcaatgcaatgtacaaagagatccttgatgaaaacctgctccaaagtgctcaggacctcagaactGGGgcaatggttcaccttccaacagaacaacgaccctaagcacacagccaagacaacgcaggagtggcttcgggacaagtctctgaatgtccttgagtgtcccagccaaaGCCTGGATGTGAACcggattgaacatctctggagagacctgaaaatagctgcgcagcgacgctccccatccaacctgacagagcttgagaagatctgcagagaagaacagaagaaactccccaaatacaggtgtgccaagcttgtagcgtcatacccaagaagacttgaggctgtgaTCACtgtcaaagatgcttcaacaaagtccggagtaaaggctctgaatacctgagtaaaggctctgaatacctgagtaaaggctctgaataccggagtaaaggctctgaataccggagtaaaggctctgaataccggagtaaaggctctgaatacttacagtatgtaaatcTGATATTTTTTTGGCAAAAAAAtgataaaatgtttttgttttgtcattgggGCAGTGTGTGTAGTAGATTCAGGGGGGAAatgatttcatcaattttagaatcaggctgtaacgtcacaaaatgaggaaaaagtcaaggggtctgaatactttccgaatgcactatgtATTTGCTATGCCTCCGCTAGTTCAGATGGAAACAGTTATAGCCATTTTCAAAGGATAACTGACTGAATCATTTTGTATTAGAGTAGACAATCAAGATTTGAGCCATACAATTCAGACCATTCAGATGGCAGACTGATCAAGTCGCTGACTGATAACTTTTATTTATCTTTCGTAGGCTTTGTCACCATCAGTTGTTACCAGGAGATTCAGCATACAGTAATATtattttaaatgaaatgaaaaaaagtaCTAAAAAGGGTGTTCATtaacaaaacaatgtaactatgatctactatactgaacaaaaatataaacgcaacatgcaacattttaaaagatttactgagctacagttcatatgaaggaaatcagtcaattaaaatacatcaattaggctctaatctatgtaCTTCACATGACTgcgaatacagatatacatctgttggtccTGGATACCTTAATTAAACATAAAAGTATGGGTGTGGATCATAAAACCCGTCCGTATCTAGTGTGACCCCCATTTGcatcatgcagcgtgacacatctccttcgcatagagttgatcaggctgttgattgtggcctgtgtaatgttgtcccactcctcttcaatggctgtgagaagttgctggatattggtgggaactgaaacacgctgtcgtacacgttgattcAGAAcatcccaaacttgctcaatgggtgacatgtctggtgagtatgcaggccatggaagaactatgACATttacagcttccaggaattgtgtacacgTCCTTGCGACATGGAGCCGTACATTACCATTCTGAAACAcaaggtgatggcggcggatgaagggcacgacaatgggcctcatgatctcaatatctctgtgcattcaaattgccatcgataaaatgcaattgtcttggttgtccatagcttatgcctgcccataccacaacCCCACCGCCACTGGGCATTTTGTTCACAACATtggcatcagcaaaccgcttgcccacacaatgccatacacatggtctacAGTTGAGAGGCTGGTAGgatgtactgtcaaattctctaaaacgacttgaggcggcttatggtaaagaaactAACATAGCAtttgtctggcaacagctctggtcgacattcctgcagtcagcaagtcaattgcacgctcccttaaaACTAGAAACATCTCTAGCATTGTGTTTCGTGACAAAATGGCACATTTTTTagggccttttgtccccagcacaaggcgcacctgtgtaatgaccatgctgtttaatcagcttattgatatgccacacctgtcaggtggatggattatcctgGCAAAGgaaaaaatgctcactaacagggatgtaaacaaatttgtgagcaataagctttttgtgcgtatggaacatttctgggatattttatttcagcccacgaaacattggaccaacactgtacatgatgcgtttatatttttgctcagtataatAATGTTTCAATGTATTCCATGACTATATAACGTTATTGTTTCACTGTGGTGGATTCATCTAAAAGTGATTCCTATGAATACAATGAATTTCATAATAAAAAAGCTGTCATAAAAAATGCCAACCATGATCATTTACGACATCTAGGCAGGTGTTTGGAGAGATGTGCTTTCCGAGTGAAGCTGAAAAGGCAGTGGGGGCAGGGATACGGTCTCTCCCCTGTGTGGGTCTTCATGTGGACTTTGACGTGACTCTGTTCATAAAAGCTCTTCCCACATTCTTGGCAGGAGTATGGCTTTATATCACGGTGAGTGTGGGTCCTCATGTGACTGGACAGAGAACCAGAACGGTTAAACCGGCTGGGGCATTCAGGGCATTCAAAtggcttctccccagtgtgtaGGAGCTTGTGCTT
>TU2630648
ACAATGCACAAGTTACAATTACATCATCTTTCAATCAGTCAATTTCCAATGATGAATCCCATTTCTCCCAGTATTCCTGGCCTCTCTCATTCTGTGTTCTAAAGGTCATAGTAATGATGCCTATGTGAGATGGTGTGCTGCGGTGTGTTCTGCCGTCTTAAAAGAGGAGTCGTGCTGAGGGCCTGACCTTTTTTCACACATCTGGTTCACAGGGCAAAAGGAAAGGGGACATACAGGCTCTACAATGCattcggaagtattcagaccactcccCCTTTTTTTCATATTTGGTTACAATGTAtgcattttacaataaggctgtaattacatttttcccctcagcaatctacatataataccccataatgacaaagcaaaacagggttttatacatttttgcaaatgtattacaaattaaaaacagaaataccttatttacataagcattcagaccctttgctatgagacttgaaattgagctcaggtgcatcctgtttccattgatcatccttgagatatttctacaacttgatttctgcagcactctaccaatcagggctttatggtaaagtggccagacagatgcccctcctcagtaaaaggcacatgacagccacctggagtttgccaaaaggcaccttaaggactctgaccatgagaaacaagattatttggtctgatgaaaccaagattgaactctcaagcctgaatgccaagcgtcacgtctggaggaaacctggcaccatccctacagtgaagcatggtggcagcatcatgctgtggggatgtttttcagtggcagatactgggagactagtcaggaaagatgaacagagcaatgcaatgtacaaagagatccttgatgaaaacctgctccaaagtgctcaggacctcagaactGGGgcaatggttcaccttccaacagaacaacgaccctaagcacacagccaagacaacgcaggagtggcttcgggacaagtctctgaatgtccttgagtgtcccagccaaaGCCTGGATGTGAACcggattgaacatctctggagagacctgaaaatagctgcgcagcgacgctccccatccaacctgacagagcttgagaagatctgcagagaagaacagaagaaactccccaaatacaggtgtgccaagcttgtagcgtc
>TU2630654
tgcaacattttaaaagatttactgagctacagttcatatgaaggaaatcagtcaattaaaatacatcaattaggctctaatctatgtaCTTCACATGACTgcgaatacagatatacatctgttggtccTGGATACCTTAATTAAACATAAAAGTATGGGTGTGGATCATAAAACCCGTCCGTATCTAGTGTGACCCCCATTTGcatcatgcagcgtgacacatctccttcgcatagagttgatcaggctgttgattgtggcctgtgtaatgttgtcccactcctcttcaatggctgtgagaagttgctggatattggtgggaactgaaacacgctgtcgtacacgttgattcAGAAcatcccaaacttgctcaatgggtgacatgtctggtgagtatgcaggccatggaagaactatgACATttacagcttccaggaattgtgtacacgTCCTTGCGACATGGAGCCGTACATTACCATTCTGAAACAcaaggtgatggcggcggatgaagggcacgacaatgggcctcatgatctcaatatctctgtgcattcaaattgccatcgataaaatgcaattgtcttggttgtccatagcttatgcctgcccataccacaacCCCACCGCCACTGGGCATTTTGTTCACAACATtggcatcagcaaaccgcttgcccacacaatgccatacacatggtctacAGTTGAGAGGCTGGTAGgatgtactgtcaaattctctaaaacgacttgaggcggcttatggtaaagaaactAACATAGCAtttgtctggcaacagctctggtcgacattcctgcagtcagcaagtcaattgcacgctcccttaaaACTAGAAACATCTCTAGCATTGTGTTTCGTGACAAAATGGCACATTTTTTagggccttttgtccccagcacaaggcgcacctgtgtaatgaccatgctgtttaatcagcttattgatatgccacacctgtcaggtggatggattatcctgGCAAAGgaaaaaatgctcactaacagggatgtaaacaaatttgtgagcaataagctttttgtgcgtatggaacatttctgggatattttatttcagcccacgaaacattggaccaacactgtacatgatgcgtttatatttttgctcagtataatAATGTTTCAATGTATTCCATGACTATATAACGTTATTGTTTCACTGTGGTGGATTCATCTAAAAGTGATTCCTATGAATACAATGAATTTCATAATAAAAAAGCTGTCATAAAAAATGCCAACCATGATCATTTACGACATCTAGGCAGGTGTTTGGAGAGATGTGCTTTCCGAGTGAAGCTGAAAAGGCAGTGGGGGCAGGGATACGGTCTCTCCCCTGTGTGGGTCTTCATGTGGACTTTGACGTGACTCTGTTCATAAAAGCTCTTCCCACATTCTTGGCAGGAGTATGGCTTTATATCACGGTGAGTGTGGGTCCTCATGTGACTGGACAGAGAACCAGAACGGTTAAACCGGCTGGGGCATTCAGGGCATTCAAAtggcttctccccagtgtgtaGGAGCTTGTGCTTGGACAGATCCCCAGACTGAGTGAAGCTTTTACTGCACTCGGTACAGGTGTATGGTTTCTCACCCGTGTGAGTCAGGTGATGGTTCTTCAGGTGTGAGAGTCGAAAAAACTTCTTGTCGCACACTGTGCAGTGGTAGGGCCTCTCCCCGGTATGTGAGCGCATGTGTAACTTCAACAACCCCAGCCTCAAGAACGCCCGCCCACAAACCCCACAGTGGTAGTTCTTCTCGTTGCTGTGGATCTTCAGGTGTGTTTTCAGATAAGCTTTGTCAGCAAAGTCTTTACCACAAACGGTGCATTTGAAAGGTCTCTCCCCCGAGTGTGTTCGCAGGTGAAGCTTCAGATGGGCCCTGCTTGCATACCGCTTATCGCATTGGGTGCAGGAGAACTTCCGCTCACCAGTGTGAACCGACATGTGAGTCCAGAGGAGCGACTTCCGTTTGAAAGTCTTCCCGCAGTCCTGGCATTTGAACGGCTTGAGCCCCGAGTGTATTAACGAGTGATAACGGTAACCGCTGTTCTCTGAGAAGCGCTTGCCGCACTCCTTACATTCGtacggcttctctccagtgtggatGCGCATGTGAGTGTCCAGGCTCGTAGGAGTACTGAGGATCTTCCCACACTCTGAGCAATGGAAGCCGACTTCCAGACAGACCACAGTCTTAGTGTCCTTAGGTTTAGTGCCCTCTGGTTCTTGACACCGGTGTGGCCCTAGTCCCCAGCAATTttcaaagctcttcccacagtcagcaCAACTGATGTGACCATCGGTGCGAAAAACAGCCATTTTGTGCAAATTCTTGCAGTGCTTCAGCAGGGTTCCCAGGTACGGGAATCTACGGGCACACTGCGGGCAGGGGTGGAGTTTCCCCGGAACCCTGGGGGGACGGACAGGTTTCTGGGGAAGGGCGGAGGGGTGGGCCTGGCGGGTGTGGATGTGTAGCTGTCGTGGGGTATGGAACATGCAGCTGCACTGGGGACAGCTGTGTGTGGGGGCGTACACGGTTTTACTCTTTGAGACGTGGCTTTTCAACATGGCCAGGTACTGCTTCTGGTGTTTGGTCTTGATGTGGTTCTCCAGGAAGTAACAGTCAGTGAAGGAGATGGTGCAGTGTGGACAAGGAAAGAA
>TU2630650
ccTGGATACCTTAATTAAACATAAAAGTATGGGTGTGGATCATAAAACCCGTCCGTATCTAGTGTGACCCCCATTTGcatcatgcagcgtgacacatctccttcgcatagagttgatcaggctgttgattgtggcctgtgtaatgttgtcccactcctcttcaatggctgtgagaagttgctggatattggtgggaactgaaacacgctgtcgtacacgttgattcAGAAcatcccaaacttgctcaatgggtgacatgtctggtgagtatgcaggccatggaagaactatgACATttacagcttccaggaattgtgtacacgTCCTTGCGACATGGAGCCGTACATTACCATTCTGAAACAcaaggtgatggcggcggatgaagggcacgacaatgggcctcatgatctcaatatctctgtgcattcaaattgccatcgataaaatgcaattgtcttggttgtccatagcttatgcctgcccataccacaacCCCACCGCCACTGGGCATTTTGTTCACAACATtggcatcagcaaaccgcttgcccacacaatgccatacacatggtctacAGTTGAGAGGCTGGTAGgatgtactgtcaaattctctaaaacgacttgaggcggcttatggtaaagaaactAACATAGCAtttgtctggcaacagctctggtcgacattcctgcagtcagcaagtcaattgca

Function

symbol description
trmt13 Predicted to enable tRNA methyltransferase activity. Predicted to be involved in tRNA methylation. Predicted to act upstream of or within methylation and tRNA processing. Orthologous to human TRMT13 (tRNA methyltransferase 13 homolog).

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2630658 False 1299 TUCP 0.44 1 15023633 15024931
TU2630662 False 1253 TUCP 0.44 1 15023633 15024885
TU2630647 False 3408 TUCP 0.42 1 15023725 15027132
TU2630648 False 1161 TUCP 0.45 1 15023725 15024885
TU2630654 False 2693 lncRNA 0.48 1 15025571 15028263
TU2630650 True 706 lncRNA 0.47 1 15025697 15026402

Neighbor

gene id symbol gene type direction distance location
LOC118946527 NA coding upstream 1978 15019538 ~ 15023593 (+)
LOC118946541 NA coding upstream 7732 15017024 ~ 15017839 (+)
LOC110487975 LOC106570533 coding upstream 53418 14933643 ~ 14972153 (+)
LOC110487974 LOC106570531 coding upstream 106936 14912317 ~ 14918635 (+)
LOC110487973 LOC106570532 coding upstream 117188 14895676 ~ 14908383 (+)
LOC110487978 oxnad1 coding downstream 7136 15035150 ~ 15046389 (+)
LOC110487981 LOC106570537 coding downstream 103475 15131738 ~ 15188805 (+)
LOC110489387 LOC106588864 coding downstream 301804 15330067 ~ 15398500 (+)
LOC118946488 LOC106570510 coding downstream 376467 15404730 ~ 15413624 (+)
LOC110487983 LOC106570504 coding downstream 417184 15445447 ~ 15455152 (+)
G2299641 NA non-coding upstream 27021 14998219 ~ 14998550 (+)
G2299640 NA non-coding upstream 27529 14997774 ~ 14998042 (+)
G2299610 NA non-coding upstream 94277 14930886 ~ 14931294 (+)
G2299609 NA non-coding upstream 94850 14930479 ~ 14930721 (+)
G2299644 NA non-coding downstream 3432 15031695 ~ 15031920 (+)
G2299645 NA non-coding downstream 3990 15032253 ~ 15032472 (+)
G2299646 NA non-coding downstream 4697 15032960 ~ 15033255 (+)
G2299478 NA non-coding downstream 19467 15047730 ~ 15048936 (+)
LOC110489384 LOC106570524 other upstream 386668 14582924 ~ 14638903 (+)
LOC110489442 LOC106570521 other upstream 510137 14513613 ~ 14517978 (+)
G2299272 NA other upstream 605894 14418661 ~ 14419677 (+)
G2299191 NA other upstream 721339 14303736 ~ 14304232 (+)
LOC118936620 LOC106570515 other upstream 801694 14207166 ~ 14225549 (+)
G2300167 NA other downstream 388963 15417226 ~ 15417507 (+)
G2300406 NA other downstream 852418 15880681 ~ 15882161 (+)
dss1 NA other downstream 1175210 16203473 ~ 16252597 (+)
G2301452 NA other downstream 1496247 16524510 ~ 16525394 (+)

Expression


Co-expression Network