G2300152


Basic Information

Item Value
gene id G2300152
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 15383457 ~ 15386018 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2631263
atgcagaacgccacagggtgtttttgtgctggtcaagggcagtcaggtggttctacatttcttgaatggggcatgcttatgtaagatggtgaggaaggcactatAGAtctggtctatagcaagcggcaacttgtttctggaaagttGTCAAACTAACCAACCAACTGTCGAACTAACCAACTATCTATCGAACTAACCAACTATTGAACTTACCAACTATTGAACTAATCAACTAACCAACTATCTATCGAACCAACCAACTATCGAACTAACCAACTAACTGTTGAACTAACCAACTATCCAACTATTCAACTAACCAACTGTCCAACTATCGAACTAAACAACTATCGAACTAACCAACTGTCTAACTAACCAACCAACTGTCGAACTAACCAACTAACTGTCAAACTAACCAACTAACCAACTATCTATCGAACTAGCCAACTATCGAACTAACCAACTAACTGTCAAACTAACAAACTATCCAACTATCGAACTAACCAACTATCTATGTAACCAACTATCGAACTAACCAACTGTCAAACTAACCAACTAACTGTCAAATTAACTAACCAACTATTAAACTAACCAACTGTCAAACTAACCAACTGTCAAACTAACCAACTATCTATGAAACTATCTATCGAACTAACCAACTATCTAACCAACCAACTGTCGAACTAACCAACTAACTGTCGAACTAACCAACTAACTGTCAAACTAACAAGATATCCAACTATTGAACTAACCAACTATCCAACTATCTATGTAACCAACTATCGAACTAACCAACTAACCAACTGTCGAACTAACCAACTAACTATCGAACTAACTAACCAACTATTGAACTAACGAACTGTCAAACTAACCAACTGTCAAACTAACCAACCAACTGTCGAACTAATCAACCAACTGTTGAACTATCCAACTATCTATGTAACTAACTATCAAACTAATCAACtgtctaactaactaaccaactgtCGAACTAACCAACTGTCGAACTAACCAACTGTCGAACTAACAAACTGTTGAACTAACCAACTGTCGAACTAACCAACTGTCGAACTAACCAACAACTGTCAAACTAACCAACTAATTGTCAAACTAACCAACTATCGAACTAACCAACTATCAAACTAACCAGCTATCTACGTAACTAACTATCGAACTAACCAACTATCGAACTGACCAACTGTCGAACTAACCAACTGCTGAACTAACCAACTAACTGTCAAACTAACCAACTATCCAACTAACCAACTATCTATCGAACTAACCAACTATTGAACTAACCAACTAACTGTCAAACTAACAAGCTATCCAACTGTCGAACTAACCAACAACTGTCGAACTAACCAACTAACTGTCAAACTAACCAGCTATCCAACTTCTCAACTATCTATGTAACTAAATATTGAACTAACCAACTGTCGAGCTAACCAACTAACTGTCTAACTAACCAACAACTGTCGAACTAACCAACTAACTGTCAAACTAACCAACTAACTGTCGAACTAACCAACTAACTGTCAAACCAAGCAACTATCCAACTATCGAAATAACCAACTATCTATCGAACTAACCAACTATCGAACTAACCAACTTTCGAACTAACCAAGTAACTATCGAACTAACCAACTAACCAACTATCGAACTAACCAACTATCTATGTAACTTACTATCGAACTAACCAGCTATCAAACTAACTAACCTACTAACCAAATATCTATCTAACCAACTATCGAACTAACCAACTAACTATCAAACTAACCCTCTATCGAATTAACCAACCAACTGTCAAGCTAACCAACTATCGAACCAACCAACCAACTTTCGAACTAACCAACCAACTGTCAAACTAACCAACTGTTGAACTAACCAACCAACTGTCAAACTAACCAACTGTCGAAATAACCAACCAACTGTCGAACTAACCAACCAACTGTTGAattaaccaaccaaccaaccaaccaaccaactatCTATCGAAATAACCAACTAACTATTGAACTAGCCAACTAACTGTCGAACTAACCAACTAACTATTGAACTAACTAACCAACTATTGAACTAACCAACTGTCCATCTAACCAACTGTCAAACTAACCAACCAACTGTCAAACTAACCAACCAACTGTCGAACTAACCAACTAACTGTCAAACTAACCAACCAACTGTCGAACTAACCAACCAACTATCTATCAAACTAACCAACCAACTGTTGAGCTAACCAACTAACTGTTGAACTAACCAACTAACTATTGAACTAACTAACCAACTATTGAACTAACCAACTGTTGATCTAACCAACTGTCAAACGAACCAACCGTCAAACTAACCAACCAACTGTTAAACTAACCAACCAACTGTCAAACTAACCAACTAACTGTCAAACTAACCAACCAACTGTCGAACTAACCAACCAACTATCTATCAAAATAATCAACTATCGAACTAACTAACCAACTGTCGAACTAACCAACCGACTGTCGAAC

Function

NR:

description
extensin-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2631263 True 2498 lncRNA 0.37 3 15383457 15386018

Neighbor

gene id symbol gene type direction distance location
LOC110487981 LOC106570537 coding upstream 194673 15131738 ~ 15188805 (+)
LOC110487978 oxnad1 coding upstream 337068 15035150 ~ 15046389 (+)
LOC118946527 NA coding upstream 359864 15019538 ~ 15023593 (+)
LOC118946541 NA coding upstream 365618 15017024 ~ 15017839 (+)
LOC110487975 LOC106570533 coding upstream 411304 14933643 ~ 14972153 (+)
LOC118946488 LOC106570510 coding downstream 18712 15404730 ~ 15413624 (+)
LOC110487983 LOC106570504 coding downstream 59429 15445447 ~ 15455152 (+)
LOC110487984 LOC106570503 coding downstream 72677 15458695 ~ 15474470 (+)
LOC110487988 LOC106570500 coding downstream 221610 15607628 ~ 15610456 (+)
mterf3 LOC106570479 coding downstream 664110 16050128 ~ 16058601 (+)
G2300087 NA non-coding upstream 89655 15284747 ~ 15293802 (+)
G2300072 NA non-coding upstream 128780 15253052 ~ 15254677 (+)
G2300065 NA non-coding upstream 138149 15244751 ~ 15245308 (+)
G2300038 NA non-coding upstream 177064 15206023 ~ 15206393 (+)
G2300126 NA non-coding downstream 8404 15394422 ~ 15395052 (+)
G2300180 NA non-coding downstream 53207 15439225 ~ 15439460 (+)
G2300147 NA non-coding downstream 69195 15455213 ~ 15458560 (+)
G2300236 NA non-coding downstream 158913 15544931 ~ 15545946 (+)
G2299643 trmt13 other upstream 356325 15023633 ~ 15028263 (+)
LOC110489384 LOC106570524 other upstream 744554 14582924 ~ 14638903 (+)
LOC110489442 LOC106570521 other upstream 868023 14513613 ~ 14517978 (+)
G2299272 NA other upstream 963780 14418661 ~ 14419677 (+)
G2300167 NA other downstream 31208 15417226 ~ 15417507 (+)
G2300406 NA other downstream 494663 15880681 ~ 15882161 (+)
dss1 NA other downstream 817455 16203473 ~ 16252597 (+)
G2301452 NA other downstream 1138492 16524510 ~ 16525394 (+)
LOC110488017 LOC106570464 other downstream 1250521 16603599 ~ 16639641 (+)

Expression


Co-expression Network