G2300330 (LOC106570506)


Basic Information

Item Value
gene id G2300330
gene name LOC106570506
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 15714580 ~ 15714808 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2631459
CGTCTGCAGGAGGTCTGGGTTTGAGTCGTAGGGAGGTGCGGAACCGCGTGCGATCGTTGAAGCTCCAGCTCTTCTGCACCTTTCCGGGACTGGTGGCTTCTGGGACATTGTCCGTGCTGGGCAACTGGCGGACACTTGTCCCGGGAGGCAGTGGGGACGCCTTGTTCCGGCTCGCCTGGGACAAACGGGAGTTGTTCAGCCGCATCCTGTCCCGGAATCCCATTTTGCT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2631459 True 229 lncRNA 0.62 1 15714580 15714808

Neighbor

gene id symbol gene type direction distance location
LOC110487988 LOC106570500 coding upstream 104124 15607628 ~ 15610456 (+)
LOC110487984 LOC106570503 coding upstream 240110 15458695 ~ 15474470 (+)
LOC110487983 LOC106570504 coding upstream 259428 15445447 ~ 15455152 (+)
LOC118946488 LOC106570510 coding upstream 300956 15404730 ~ 15413624 (+)
LOC110489387 LOC106588864 coding upstream 316080 15330067 ~ 15398500 (+)
mterf3 LOC106570479 coding downstream 335320 16050128 ~ 16058601 (+)
LOC110488002 LOC106570481 coding downstream 344036 16058844 ~ 16062141 (+)
LOC110488007 chrc1 coding downstream 378290 16093098 ~ 16098054 (+)
LOC110488010 LOC106570474 coding downstream 426483 16141291 ~ 16143786 (+)
LOC118946491 NA coding downstream 432087 16146868 ~ 16163427 (+)
G2300328 NA non-coding upstream 2424 15711498 ~ 15712156 (+)
G2300325 NA non-coding upstream 14492 15699819 ~ 15700088 (+)
G2300313 NA non-coding upstream 32243 15681451 ~ 15682337 (+)
G2300262 NA non-coding upstream 66979 15647047 ~ 15647601 (+)
G2300284 NA non-coding upstream 86365 15627767 ~ 15628215 (+)
G2300351 NA non-coding downstream 43188 15757996 ~ 15758547 (+)
G2300390 NA non-coding downstream 102852 15817660 ~ 15823630 (+)
G2300400 NA non-coding downstream 104917 15819725 ~ 15820520 (+)
G2300394 LOC107670052 non-coding downstream 111768 15826576 ~ 15864039 (+)
G2300405 NA non-coding downstream 164530 15879338 ~ 15879573 (+)
G2300167 NA other upstream 297073 15417226 ~ 15417507 (+)
LOC110487981 LOC106570537 other upstream 556039 15131738 ~ 15188805 (+)
G2299643 trmt13 other upstream 687448 15023633 ~ 15028263 (+)
LOC110489384 LOC106570524 other upstream 1075677 14582924 ~ 14638903 (+)
LOC110489442 LOC106570521 other upstream 1199146 14513613 ~ 14517978 (+)
G2300406 NA other downstream 165873 15880681 ~ 15882161 (+)
dss1 NA other downstream 488665 16203473 ~ 16252597 (+)
G2301452 NA other downstream 809702 16524510 ~ 16525394 (+)
LOC110488017 LOC106570464 other downstream 921731 16603599 ~ 16639641 (+)
G2301522 LOC106570460 other downstream 954799 16669607 ~ 16693934 (+)

Expression


Co-expression Network