G2300406


Basic Information

Item Value
gene id G2300406
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 15880681 ~ 15882161 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2631539
tcctatagctcctcccaccaccaTCCTCTGCATGGGAACACTGTCAGTGAAAGCCAAGGGGGATCACCAAATCAGTATATGTATTCAGAGGAAGAGCAGGTGGGAAGAAAGAGAGTGCATTAGGTATGGAAAACATTGGCCATACCCTTCATTTAATAGCATTAGATGTGGACACAaatgatacagtgcattcggaaagtattcagacccattgatttttttcccacattttgttacgttacagccttattttaaaatggattaaataattttttccctcagcaatctacacataaaaccccacaatgacaaagcgaaaacaggtttttctacatttttgcaaatgtatctatatataaatatatataaaacgtatttacataagtaatcagaccctttgctatgagactccaaattgagctcaggtgcatcctgtttccattgatcatccttgagatgattctacaacttggagtccacctgtggtaaattcaattgattggacatgatttggaaaggcacacaactgtctatataaggtcccacagtgcatgtcagagcaaaaaccaagccatgagatcgaaggaattgtccatagagctccgagacatgattgtgtcgaggcacagatctggggaagggaaccaaatATTTATGAAGCATtcaaggttcccaagaacacagtggcctccatcattcttgaataggagtttggaaccaccaagactcttcatagagctggccacccggccaaactgagctatcggtggagaagggccttggtcagggaggtgaccatgaatcctatggtcactctgacagagctgcaaagttcctctgtggaaatgggagaaccttccagaaggacaaccatctttgcagcgctccaccaatcaggcctttatggagagtggccagatggaagccacccctcagtaaaaggcacgttacagccctcttggagtttgtcaaaaggcacctaaaggactctcagaccatgagaaaccagattctctggtctgatgaaagcaagattgaactctttggcctgaatgccaaccgtcacgtctggaggaaacctggcgccatcccaatggtgaagcatggtggtggcagcatcatgctgtggggatgtcaggatcaagggaaatatgaacgagagagatccttgatgaaaacttgctccagtgtactcaggacttcagactggggccgaaggttcaccttccaacagaacaatgaccctaagcacacagccaagacaacgcaagagtggctttgggacaagtctctgaatgtccttgagtggcccagccagagcccggacttgaacccgatgtaaaatctctggagagacctgaaaatagctgtgcagcaatgctccccatccaacctgacagagcttgagaggatctgcagagaatgggagaaactccccaaatacaggtgtgccaagctcgtaGCATCATACCAAAAagtct

Function

NR:

description
TC1-like transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2631539 True 1481 TUCP 0.46 1 15880681 15882161

Neighbor

gene id symbol gene type direction distance location
LOC110487988 LOC106570500 coding upstream 270225 15607628 ~ 15610456 (+)
LOC110487984 LOC106570503 coding upstream 406211 15458695 ~ 15474470 (+)
LOC110487983 LOC106570504 coding upstream 425529 15445447 ~ 15455152 (+)
LOC118946488 LOC106570510 coding upstream 467057 15404730 ~ 15413624 (+)
LOC110489387 LOC106588864 coding upstream 482181 15330067 ~ 15398500 (+)
mterf3 LOC106570479 coding downstream 167967 16050128 ~ 16058601 (+)
LOC110488002 LOC106570481 coding downstream 176683 16058844 ~ 16062141 (+)
LOC110488007 chrc1 coding downstream 210937 16093098 ~ 16098054 (+)
LOC110488010 LOC106570474 coding downstream 259130 16141291 ~ 16143786 (+)
LOC118946491 NA coding downstream 264734 16146868 ~ 16163427 (+)
G2300405 NA non-coding upstream 1108 15879338 ~ 15879573 (+)
G2300394 LOC107670052 non-coding upstream 16642 15826576 ~ 15864039 (+)
G2300390 NA non-coding upstream 57051 15817660 ~ 15823630 (+)
G2300400 NA non-coding upstream 60161 15819725 ~ 15820520 (+)
G2300351 NA non-coding upstream 122134 15757996 ~ 15758547 (+)
G2300438 NA non-coding downstream 12562 15894723 ~ 15895034 (+)
G2300441 NA non-coding downstream 15047 15897208 ~ 15897409 (+)
G2300442 NA non-coding downstream 15841 15898002 ~ 15899297 (+)
G2300443 NA non-coding downstream 17196 15899357 ~ 15900387 (+)
G2300444 NA non-coding downstream 18269 15900430 ~ 15900823 (+)
G2300167 NA other upstream 463174 15417226 ~ 15417507 (+)
LOC110487981 LOC106570537 other upstream 722140 15131738 ~ 15188805 (+)
G2299643 trmt13 other upstream 853549 15023633 ~ 15028263 (+)
LOC110489384 LOC106570524 other upstream 1241778 14582924 ~ 14638903 (+)
LOC110489442 LOC106570521 other upstream 1365247 14513613 ~ 14517978 (+)
dss1 NA other downstream 321312 16203473 ~ 16252597 (+)
G2301452 NA other downstream 642349 16524510 ~ 16525394 (+)
LOC110488017 LOC106570464 other downstream 754378 16603599 ~ 16639641 (+)
G2301522 LOC106570460 other downstream 787446 16669607 ~ 16693934 (+)
LOC110488019 LOC106570458 other downstream 903207 16785333 ~ 16788539 (+)

Expression


Co-expression Network