G2300388


Basic Information

Item Value
gene id G2300388
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 15904875 ~ 15907953 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2631518
acgacagctttgcacactcttggtattctctcaaccagcttcatggaggtagtcacctggaatgcatttcaattaacaggtgtgccttgttaaaagtgcatttgtggaatttctttccttcttaatgcatttgagccaatcagttgtgttgtaacaaggtaggggtggtatacagaagatagccctatgtggtaaaaaaacaagtccatattatggcaagaacagctcaaataagcagagaaacAACAGATCATCTTtaatacatgaaggtcagtcaatgtggaaaattccaagaactttgaacgcttcttcaagtgcagtcgcaaaaaccatcaagtgctatgatgaaactggctctcatgaggaccgacacaggaaaggaagacccagagttacctctgctgcagaggatatgttcattagagttaccagcctcagaaattacagcctaaataattgcttcacagagttcatgtaacagacacatctcaacatcaactgttcaaaggagactgcgtgaatcaggccttcatggtaaaattgctgcaaagaaaccactactaaaggacaccaataagaagaagagacttggttgggccaagaaacacaagcaacggACATTAGACAGGGGAAAtcagtcctttggtctgatgagtccaaatgtgagatttttggttccaactgtgtctttgtaagacgcagagtaggtgaacggatgatctctgcatgtgtggttctcaccataaagcatggaggtggtggtgtgatggtgctttgctggtgacaccgtctgtgatttatttagaattgaaggcacacttaaccagcatggctagcacagcattgtgcagtgatacgccatcccatctggtttgcacttagtggaattatcatttgtttttcaacaggacaatgacccaacatacctccaggctgtgtaagggctatttgaccaaggaaagtgatgagtgctgcatcagatgacctggcgtccacaatcacccaacctcaatccaaaggagatgttttgggatgagttggaccgcagagtgaagaaacagcagccaacaagtgctcagaatatgtgggaactccttcaagactgttggaaaagcattccaggtgaagctggttgagagaatgccaagagcgtgcaaagctgtcatcaagctaaagggtggctactttgaagaacctaaaatatatttgtttaacacttatttcatagttttgatatcttcactattattcaacaatgtagaaaatagtaaaaaataaagaaaaacccttgaatgagtaggtgtccaaactttttaaattttatttttttattacccCATTTTCGTGTTATCCAATTGCTAGTTAGTCtcgtctcatcactgcaactcccgtatggacacaggagagacaaaggtcgagagccgcgcgtcctccaaaacacaacccaaccaagccgcactgctacTTGACACAatacccacttaacccggaagccagccgcaccaatgtgtcggaggaaacgcgtacacctggcgaccatgtcagcatgcactgcacccggcccgccacaggagtcactagtgcgcgatggcACAAGGGCATCCTTGCCGGACAACCCCCCaatccggatgacgctgggccaattgtgcgccaccccatgggtctcccggtcgtggccggctgcgacagagcctggactcaaacccagaatctctagtggcacagctagcactgtgatgcagtgccttagaccactgcgccactcgggaggcgtgtccaaacttttgactggtactgtacatacattatTATTCATGTCTATTAGTGTTGTACATCCATGTTAACAACACAAACGATATTCACATATTGTGGAGTGGGTTAGAGGTGCGCACTCTCGCTTTAATAGCTTGGAGTTTTGGTCTTTGTACTGGTTAGCAATGCTTAGTGATGGCatcagtttatatatatatgagggagggatggggagaaagtatgtgatatatatatatatatatatatatatattagtgagCATCACAGCCATACACTCCCCGGGCATGCCTAGAGAGAGCTGGTTAGGGAACTAAGCGTCATATACATTTCACACAGAACTATGTACAGCTACGTAACAAGCAGGCTAGGAGAGGTATCCCTCTGGAGGGTTTTTATTCATCTATTCAGCTTATCTCAGCTGTTTCAGGTGCCATGCAGAGTTAATTTACATTGGCAGGAAAACAAGGGAACACCAGAGGGGGCGAATATAGCAGGAAAGGTGTTGTTCCTAGGTTTCTTCCTTAAAAAGCGCTGGCCTGCATCACAGCGTGGCTTTCTCTATCAGATAGCATATCACTCGCTCTCTCTACAGTGCTTAATTTACAAGGCAAGGAAGAGCGCCAAAATCGCAGAGGACAGGAAAGTTCTATAGAATTTGTTCAGCTAATGTTGTTCAGAAGTGATTTACTAGTTAGCTACCATATCTCTGTAAGTAGAAGCAGATTGCCAAGGAGGACCGAACAAGCAGAAAGCATAAAAACAAACAAGGAATGTTAAAAAGAAGAAGGAATAACTTACAACATACTTAAATAGAACTTCAAATAAATAACTTCAAAAATGTGCCCTTCTTTGCTGCACTCTATGGCAGGCCTGCTGCAATAGGTGACAGAACCCTTTTTTCTGTCACCCAATTCGTCTCCTGAAGGGGGTGGGATGATGGCGGGGAGGTGTAACAGACAAATTGGAGGGAACCTCAAAAAGTGGAACAGATCATGCAAAAAGATAGCGAGGGGAAAAGACCATCATTCAATCCTTCTGGCTgccttcctctccctttcctctagAGGGCGTCGCTCCATCACTCACGGGAACGGCCCACGATAGCCAGGATGTAGAGGAAGATGTTGATGATGTCTGTGTAGAGGTTGAGAGCAGCAAAGATGTACTCctctggactcagagccagcttCTTGTTGCCCAGGAGGAGCTGGGTGTCCACAGCCAAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2631518 True 2999 lncRNA 0.45 2 15904875 15907953

Neighbor

gene id symbol gene type direction distance location
LOC110487988 LOC106570500 coding upstream 294419 15607628 ~ 15610456 (+)
LOC110487984 LOC106570503 coding upstream 430405 15458695 ~ 15474470 (+)
LOC110487983 LOC106570504 coding upstream 449723 15445447 ~ 15455152 (+)
LOC118946488 LOC106570510 coding upstream 491251 15404730 ~ 15413624 (+)
LOC110489387 LOC106588864 coding upstream 506375 15330067 ~ 15398500 (+)
mterf3 LOC106570479 coding downstream 142175 16050128 ~ 16058601 (+)
LOC110488002 LOC106570481 coding downstream 150891 16058844 ~ 16062141 (+)
LOC110488007 chrc1 coding downstream 185145 16093098 ~ 16098054 (+)
LOC110488010 LOC106570474 coding downstream 233338 16141291 ~ 16143786 (+)
LOC118946491 NA coding downstream 238942 16146868 ~ 16163427 (+)
G2300444 NA non-coding upstream 4052 15900430 ~ 15900823 (+)
G2300443 NA non-coding upstream 4488 15899357 ~ 15900387 (+)
G2300442 NA non-coding upstream 5578 15898002 ~ 15899297 (+)
G2300441 NA non-coding upstream 7466 15897208 ~ 15897409 (+)
G2300438 NA non-coding upstream 9841 15894723 ~ 15895034 (+)
G2300415 NA non-coding downstream 3133 15911086 ~ 15911367 (+)
G2300446 NA non-coding downstream 4606 15912559 ~ 15913397 (+)
G2300447 NA non-coding downstream 6031 15913984 ~ 15914233 (+)
G2300448 NA non-coding downstream 6670 15914623 ~ 15914827 (+)
G2300450 NA non-coding downstream 8788 15916741 ~ 15916960 (+)
G2300406 NA other upstream 22714 15880681 ~ 15882161 (+)
G2300167 NA other upstream 487368 15417226 ~ 15417507 (+)
LOC110487981 LOC106570537 other upstream 746334 15131738 ~ 15188805 (+)
G2299643 trmt13 other upstream 877743 15023633 ~ 15028263 (+)
LOC110489384 LOC106570524 other upstream 1265972 14582924 ~ 14638903 (+)
dss1 NA other downstream 295520 16203473 ~ 16252597 (+)
G2301452 NA other downstream 616557 16524510 ~ 16525394 (+)
LOC110488017 LOC106570464 other downstream 728586 16603599 ~ 16639641 (+)
G2301522 LOC106570460 other downstream 761654 16669607 ~ 16693934 (+)
LOC110488019 LOC106570458 other downstream 877415 16785333 ~ 16788539 (+)

Expression


Co-expression Network