G2300446


Basic Information

Item Value
gene id G2300446
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 15912559 ~ 15913397 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2631590
TGTTGGGGTCACCAGGGAACCCTGGCTGTGCAGGTTGCTGGTAGGGCACTGTGGGGTAGGGGCCCTGGGGATAGGGCATCTGAGGGTAGGGTCCCTGTCCAAACCCGGGGCCTCCCTGGGGAAACCCAGGCTGACCATAGGGTGCAGGTTGACCATAGGGTGCAGGTTGACCATAGGGTGCAGGTTGACCATATGGTGTAGGCTGGCCATAGGCTGCAGGCTGGCCAGGGTATGGAGCTTGCACTGGAGCCGGGGTGTAGTTGGGAGGGGCTATCCCGAACCCGGGCTGGGGCGGTCCGTAGACGTTGTTGTGGAGGGGGTTGTTCTCCCCCATGACCCCGGGGTAGCTGTTCTTGTCCTGAGACATGGTCTGTTTCTCTCACTGGCGG
>TU2631592
TGTTGGGGTCACCAGGGAACCCTGGCTGTGCAGGTTGCTGGTAGGGCACTGTGGGGTAGGGGCCCTGGGGATAGGGCATCTGAGGGTAGGGTCCCTGTCCAAACCCGGGGCCTCCCTGGGGAAACCCAGGCTGACCATAGGGTGCAGGTTGACCATAGGGTGCAGGTTGACCATAGGGTGCAGGTTGACCATATGGTGTAGGCTGGCCATAGGCTGCAGGCTGGCCAGGGTATGGAGCTTGCACTGGAGCCGGGGTGTAGTTGGGAGGGGCTATCCCGAACCCGGGCTGGGGCGGTCCGTAGACGTTGTTGTGGAGGGGGTTGTTCTCCCCCATGACCCCGGGGTAGCTGTTCTTGTCCTGAGACATGGTCTGTTTCTCTCACTGGCGGCCTGAGGAACAAGGAAACATGAAAAGAAACCTGTATGGAATTCACAGGAACAGACCACTGTTGGGTGGGACTTTGCATTTGAGATAACATGACAACTTAGATTAATTATGTTTGACAGCTTCAGCATTAAAGTTCAACAGACACATCTTAGGTCAATAATATTACGTATTTTTCTTCACCTTGCTTGTTTTACTCCCTCCCTCTAAAAGGAGGCACCGGAAAAAGGTAATGATAGTCTTTGCCAGTGTGGCCAAGACCGTGCTAAGATTCAAACACTGAATCTGCCTGATTACAAAGCTGATGAGAACACTGAGGAAGCTGGCAGACAAAAGGCCCAGGCAGCAGCCCAGTGATTCTTCCTGAGAACACCCAGACAGTTCACACACAGAGTCACATACCCTCGATCAACACTGCTAAGCTGCTCAGTCAAGTCTGCTCTCTGCAATGTAC
>TU2631589
GGTCACCAGGGAACCCTGGCTGTGCAGGTTGCTGGTAGGGCACTGTGGGGTAGGGGCCCTGGGGATAGGGCATCTGAGGGTAGGGTCCCTGTCCAAACCCGGGGCCTCCCTGGGGAAACCCAGGCTGACCATAGGGTGCAGGTTGACCATAGGGTGCAGGTTGACCATAGGGTGCAGGTTGACCATATGGTGTAGGCTGGCCATAGGCTGCAGGCTGGCCAGGGTATGGAGCTTGCACTGGAGCCGGGGTGTAGTTGGGAGGGGCTATCCCGAACCCGGGCTGGGGCGGTCCGTAGACGTTGTTGTGGAGGGGGTTGTTCTCCCCCATGACCCCGGGGTAGCTGTTCTTGTCCTGAGACATGGTCTGTTTCTCTCACTGGCGG

Function

NR:

description
PREDICTED: protein lifeguard 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2631590 False 389 lncRNA 0.62 1 15912559 15912947
TU2631592 False 839 lncRNA 0.52 1 15912559 15913397
TU2631589 True 383 lncRNA 0.63 1 15912565 15912947

Neighbor

gene id symbol gene type direction distance location
LOC110487988 LOC106570500 coding upstream 302103 15607628 ~ 15610456 (+)
LOC110487984 LOC106570503 coding upstream 438089 15458695 ~ 15474470 (+)
LOC110487983 LOC106570504 coding upstream 457407 15445447 ~ 15455152 (+)
LOC118946488 LOC106570510 coding upstream 498935 15404730 ~ 15413624 (+)
LOC110489387 LOC106588864 coding upstream 514059 15330067 ~ 15398500 (+)
mterf3 LOC106570479 coding downstream 136731 16050128 ~ 16058601 (+)
LOC110488002 LOC106570481 coding downstream 145447 16058844 ~ 16062141 (+)
LOC110488007 chrc1 coding downstream 179701 16093098 ~ 16098054 (+)
LOC110488010 LOC106570474 coding downstream 227894 16141291 ~ 16143786 (+)
LOC118946491 NA coding downstream 233498 16146868 ~ 16163427 (+)
G2300415 NA non-coding upstream 1192 15911086 ~ 15911367 (+)
G2300388 NA non-coding upstream 4606 15904875 ~ 15907953 (+)
G2300444 NA non-coding upstream 11736 15900430 ~ 15900823 (+)
G2300443 NA non-coding upstream 12172 15899357 ~ 15900387 (+)
G2300442 NA non-coding upstream 13262 15898002 ~ 15899297 (+)
G2300447 NA non-coding downstream 587 15913984 ~ 15914233 (+)
G2300448 NA non-coding downstream 1226 15914623 ~ 15914827 (+)
G2300450 NA non-coding downstream 3344 15916741 ~ 15916960 (+)
G2300452 NA non-coding downstream 7559 15920956 ~ 15921434 (+)
G2300453 NA non-coding downstream 8153 15921550 ~ 15921816 (+)
G2300406 NA other upstream 30398 15880681 ~ 15882161 (+)
G2300167 NA other upstream 495052 15417226 ~ 15417507 (+)
LOC110487981 LOC106570537 other upstream 754018 15131738 ~ 15188805 (+)
G2299643 trmt13 other upstream 885427 15023633 ~ 15028263 (+)
LOC110489384 LOC106570524 other upstream 1273656 14582924 ~ 14638903 (+)
dss1 NA other downstream 290076 16203473 ~ 16252597 (+)
G2301452 NA other downstream 611113 16524510 ~ 16525394 (+)
LOC110488017 LOC106570464 other downstream 723142 16603599 ~ 16639641 (+)
G2301522 LOC106570460 other downstream 756210 16669607 ~ 16693934 (+)
LOC110488019 LOC106570458 other downstream 871971 16785333 ~ 16788539 (+)

Expression


Co-expression Network