XLOC_004187


Basic Information

Item Value
gene id XLOC_004187
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 29085366 ~ 29088626 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008806
gcgagctaagtGGACAAAGTGGTAACACCGGAAAAGCcctccatacagagtacTATCTATAGTCTTTTGAGCATCCAAACAGGATTTGCGCAAGTTCTCTCCATCTGCGGTGTGGGTGGAGGTGAATACAAAGTGTTTGGCACAATGGAGTTCAACATCAGGAGGACCTTAAACCGCCTCAGAGCGCCTGCAACGAGGTCCTGACCCCCGAGTATTGCATAATATTCTCATTCTTGCTTCACTCCTTCCTTGTGGGTGTTGTCGGAGGCAAGATTAGCATTTCATTAATGTACTCCCAGGTGCAGGTAAAGTGTTAGCCTGTATGCATTGTGTGGGAGATTCCCCAAACTGTCTCATTCATGGTAAAGACCCATATGGCCACATTAACCTTTTCAGTGATTAAACAATACACTTGGTACGCTAATCTATTTGTCTACTGCATGCATAACAATGCGTGTAAAATGATATCCTTAGTTAGCATGCAGggttgtataattttattatgcCAATAAAataattcttacattttttaaataaaatatgccaTTAGTGCATAGATTTTGGATGATGATAGTATAAAGAGCAAAATTCAGGTTTGTATAAAGAATTCTTCACATTTTTTTTCGATTTGCAACTGAAAATGCTTCCCTGTAAAACCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008806 True 659 lncRNA 0.40 3 29085366 29088626

Neighbor

gene id symbol gene type direction distance location
XLOC_004186 igsf21a coding downstream 2937 28642913 ~ 29082429 (-)
XLOC_004185 klhdc7a coding downstream 445868 28633717 ~ 28639498 (-)
XLOC_004184 dhrs3b coding downstream 470758 28590733 ~ 28614608 (-)
XLOC_004183 BX649345.1 coding downstream 559870 28522364 ~ 28525496 (-)
XLOC_004182 NA coding downstream 563022 28513742 ~ 28522344 (-)
XLOC_004188 NA coding upstream 11301 29099927 ~ 29319919 (-)
XLOC_004189 arhgef10la coding upstream 242516 29331142 ~ 29563437 (-)
XLOC_004190 NA coding upstream 449356 29537982 ~ 29544989 (-)
XLOC_004191 chd5 coding upstream 486117 29574743 ~ 29658396 (-)
XLOC_004192 nr0b1 coding upstream 594283 29682909 ~ 29685853 (-)
XLOC_004063 CR854846.1 misc downstream 12957688 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 16393675 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 16463599 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 16494070 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 16572104 12512966 ~ 12513262 (-)
XLOC_004181 NA non-coding downstream 661225 28418876 ~ 28424141 (-)
XLOC_004180 NA non-coding downstream 884862 28196957 ~ 28200504 (-)
XLOC_004174 NA non-coding downstream 1275651 27800859 ~ 27809715 (-)
XLOC_004193 NA non-coding upstream 645952 29734578 ~ 29737247 (-)
XLOC_004198 CU652893.1 non-coding upstream 872488 29961114 ~ 29961901 (-)
XLOC_004200 CR318645.1 non-coding upstream 1012516 30101142 ~ 30101257 (-)

Expression


Co-expression Network