G2300391


Basic Information

Item Value
gene id G2300391
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 15948523 ~ 15951205 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2631523
GATTTAATTTTGAAAAACGatagacatttacatacactaaattcaCTGCTGGGTATGAATTAGAACATGTGACAAGCACTACTGGTGTATTTCCCCTCAAAAGGATGGTGCTACTGAATGCATTTGTGCCCCAATACAAAATGCATTAAAGAAATGAAAACAatttctctcaaatgtgcacaaatttgtttacatccctgttagtgaacatttctcctttgccaaaataatccatccatctgacagatgtggcatatcaagaatctgattaaacagcatgatcattacacaagtgctcCTTGTGCAGGGGACAGtgaaaggccactaaaatgtgtagttttgtcacataacacaatgccacagatgtaaaaaaaaaaaaaaaaagaaaataaaaacgttgagggagtgtgcattggcatgctgactgcaggaatgtccaccagagctgttgccagagaatttaatgttcatttctctaccataagcagcctccaacgttgttttagagaatttggcagtacgtccaaacggCCCCGCAACTGCAGGCCACGTgaatggtgttgtgtgggcgagcgatttgctgatgtcaatgttgtgaacagagtgccccatggtggcggtggggttatgatacagataggcataagctacggacaatgaacactattgcattttatcgatggcaatttgaatgcacagagataccgtgacgagatcctgaggcccattgtcttgccattaatccgccgccatcacctcatgtttcagcatgataatacacggcCCCATATCGCCAGGATccgtacacaattcctggaagctgaaaatgtccagttcttccattgcctgcatactcaccagacatgacaCCCATTGAacatgtgtgggatgctctgggtcGACATCTACggcagcatgttccagttcccaccaatatccagcaatttcACAAGTCATAATCAACAGCCTGTTCAACTCTACGCGAAGGacatgtgtcgcgctgcataattgactgatttccttatatgaactgaaatagttgcatgttgcatttatgtttttgttcagtgtagtataaaaaatacatttacaaatcTATCATGCAATATAAACATGATACAACCGTTGACTCAACAGCTAGATGTGAATAGTTGAGTATAGTAGAGTATTACAGCAAACCAAAACAGTGTATGCTAGGACATCCTGTGGAACATACTCCAACTGGCTGTTCAATTCAATCCTACTTCTCATACAAATCAAGTCAACGCTTGACCTCATTTTTCAATACTTTCTGCCTCAATCCAATAAAATCACAACAGTGCACAAAACAACATGACAATGCCAAGGAGGACTGAAATTTCAGGGTTCTCTCCAATCAAAATGCACCTCCAAAATGCATCTTAATACAGTTTGTCTTATCAGGGTTGCATTTTCTGCTTTTAAtttgaaaatatgtatttatattgtacCCATATGTACTCATCATTTTATTGCTATGGCACACACATGTAAGTATGATACTTAGTTtaagaaataccttattttgcACCAGCAGATTTAACAGATAAACATAATGGCTACACTTCCTCTTTATTCCAAATTTGAATGCAACTTTTTAACTAGTTTGCAAGTTTAACTAGTTCTACACATGACGAAACCTGACAAATACTGCCTGCGTGTTTAAATAGTAGACCTACCATAATTCTGTGAATAGTACAGTAGTTTTGTGGAGGAGAGTGCTGTGCAACCAATAAGCTGAACAAACAGTTCCATAACAATCTACCATTTCAAAGTgcagagaaaaaaacaataacAAGTCATCTTAATGGATACAACCAGGCTTACAATCAACCTACAGTACTACTAGCTAGGCAGTTACAGTGTCTGGTTTGTCCTTTTATTACTTGTAATAGCCAGCCTATATGGGTTTGTGAAATCTTTGACGCAGagggaaaagggaggagaggaagaggaataaGTGGGGGTGTGAGAGAGATGAGGACGATGAAATATCAGCGGTCAGCCAGCGATCTCTGTGGGTTCTGTCACCAGTTTGGATCCGTCCCAAACCGTCTTGAACTGCTCAGGAACTGGGA

Function

NR:

description
Transposable element Tcb2 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2631523 True 2096 lncRNA 0.40 3 15948523 15951205

Neighbor

gene id symbol gene type direction distance location
LOC110487988 LOC106570500 coding upstream 338067 15607628 ~ 15610456 (+)
LOC110487984 LOC106570503 coding upstream 474053 15458695 ~ 15474470 (+)
LOC110487983 LOC106570504 coding upstream 493371 15445447 ~ 15455152 (+)
LOC118946488 LOC106570510 coding upstream 534899 15404730 ~ 15413624 (+)
LOC110489387 LOC106588864 coding upstream 550023 15330067 ~ 15398500 (+)
mterf3 LOC106570479 coding downstream 98923 16050128 ~ 16058601 (+)
LOC110488002 LOC106570481 coding downstream 107639 16058844 ~ 16062141 (+)
LOC110488007 chrc1 coding downstream 141893 16093098 ~ 16098054 (+)
LOC110488010 LOC106570474 coding downstream 190086 16141291 ~ 16143786 (+)
LOC118946491 NA coding downstream 195690 16146868 ~ 16163427 (+)
G2300460 NA non-coding upstream 12141 15936144 ~ 15936382 (+)
G2300457 NA non-coding upstream 18150 15930159 ~ 15930373 (+)
G2300455 NA non-coding upstream 19593 15928488 ~ 15928930 (+)
G2300398 NA non-coding upstream 25234 15922320 ~ 15923289 (+)
G2300453 NA non-coding upstream 26707 15921550 ~ 15921816 (+)
G2300401 NA non-coding downstream 19236 15970441 ~ 15971382 (+)
G2300480 NA non-coding downstream 46356 15997561 ~ 15997853 (+)
G2300488 NA non-coding downstream 53687 16004892 ~ 16005171 (+)
G2300549 NA non-coding downstream 134319 16085524 ~ 16086420 (+)
G2300553 NA non-coding downstream 140301 16091506 ~ 16091764 (+)
G2300406 NA other upstream 66362 15880681 ~ 15882161 (+)
G2300167 NA other upstream 531016 15417226 ~ 15417507 (+)
LOC110487981 LOC106570537 other upstream 789982 15131738 ~ 15188805 (+)
G2299643 trmt13 other upstream 921391 15023633 ~ 15028263 (+)
LOC110489384 LOC106570524 other upstream 1309620 14582924 ~ 14638903 (+)
dss1 NA other downstream 252268 16203473 ~ 16252597 (+)
G2301452 NA other downstream 573305 16524510 ~ 16525394 (+)
LOC110488017 LOC106570464 other downstream 685334 16603599 ~ 16639641 (+)
G2301522 LOC106570460 other downstream 718402 16669607 ~ 16693934 (+)
LOC110488019 LOC106570458 other downstream 834163 16785333 ~ 16788539 (+)

Expression


Co-expression Network