G2300684 (LOC100380667)


Basic Information

Item Value
gene id G2300684
gene name LOC100380667
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 16365399 ~ 16374326 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2631889
cctctgTGTCATTGTTGAGGTTCCACAGATCAAGACGGCCCATCCCGTCCACGGCGGCAAACAGAGCTGGGTGCACAGGGGACCACATGACATCATAGACGTAGTCAGCGTTGTCCTCAAAGGAGTAGAGGGGTTTATTgtgCTTGGTGCTCCACAGTTTGACAGTCCAGTCAAACGACGAGGTGACGAAGAGATGGGAGAAGTCTACGGGGCCGACAGCGTTGTGACAGCTGAGGCCCGTCACTGGCCCCTGGTGGCCCTCAAACATCTCACAGATCCCCGCCTTGCTG

Function

NR:

description
Cytoplasmic dynein 1 intermediate chain 1, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2631889 True 290 lncRNA 0.57 2 16365399 16374326

Neighbor

gene id symbol gene type direction distance location
LOC110488013 LOC106570470 coding upstream 14356 16228573 ~ 16351043 (+)
dss1 NA coding upstream 152562 16203473 ~ 16252597 (+)
LOC118946491 NA coding upstream 201972 16146868 ~ 16163427 (+)
LOC110488010 LOC106570474 coding upstream 221613 16141291 ~ 16143786 (+)
LOC110488007 chrc1 coding upstream 267345 16093098 ~ 16098054 (+)
LOC110488016 LOC106570467 coding downstream 89237 16463563 ~ 16487955 (+)
LOC110488017 LOC106570464 coding downstream 229273 16603599 ~ 16639641 (+)
LOC110488019 LOC106570458 coding downstream 411007 16785333 ~ 16788539 (+)
LOC110488022 tfpi2 coding downstream 456382 16827065 ~ 16834652 (+)
calcr LOC106588943 coding downstream 472408 16846734 ~ 16955570 (+)
G2300670 NA non-coding upstream 18297 16330720 ~ 16347102 (+)
G2300671 NA non-coding upstream 22608 16336504 ~ 16342791 (+)
G2300663 NA non-coding upstream 46029 16318915 ~ 16319370 (+)
G2300614 NA non-coding upstream 148139 16215859 ~ 16217260 (+)
G2300692 NA non-coding downstream 13441 16387767 ~ 16388925 (+)
G2300716 NA non-coding downstream 51616 16425942 ~ 16429571 (+)
G2300727 NA non-coding downstream 79796 16454122 ~ 16455724 (+)
G2300701 NA non-coding downstream 91270 16465596 ~ 16466173 (+)
G2300738 NA non-coding downstream 92938 16467264 ~ 16467787 (+)
G2300406 NA other upstream 483238 15880681 ~ 15882161 (+)
G2300167 NA other upstream 947892 15417226 ~ 15417507 (+)
LOC110487981 LOC106570537 other upstream 1206858 15131738 ~ 15188805 (+)
G2299643 trmt13 other upstream 1338267 15023633 ~ 15028263 (+)
G2301452 NA other downstream 150184 16524510 ~ 16525394 (+)
G2301522 LOC106570460 other downstream 295281 16669607 ~ 16693934 (+)

Expression


Co-expression Network