G2301681


Basic Information

Item Value
gene id G2301681
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 16899049 ~ 16901831 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2633014
GTaggtaaagcatgtagaggtaaagtAGTTAAAGCATGTAGAGTTAAAGTAgctaaagcatgtagaggtaaagtacgttaagcatgtagaggtaaagtAGGTAAAGCATGTAAGCATGTATATGTAAAGTaggtaaagcatgtagaggtaaagtaggtaaagcatgtagaggtaaagtaggtaaagcatgtagaggtaaagtAGGTAAAGCATGTAAGCATGTATATGTAAAGTaggtaaagcatgtagaggtaaagtaggtaaagcatgtagaggtaaagtAGGTAGAGCATGTAGAGGTAAAGTAGGTAAAGCATGTAAGCATGTATATGTAAAGTaggtaaagcatgtagaggtaaagtaggtaaagcatgtagaggtaaaattaggtaaagcatgtagaggtaaagtagctaaagcatgtagaggtaaaggaggtaaagcatgtagaggtaaaggaggtaaagcatgtagaggtaaagtagctaaagcatgtagaggtaaagtagctaaagcatgtagaggtaaagtaggtaaagcatgtagaggtataGTAgctaaagcatgtagaggtaaagtagataaagcatgtagaggtaaagtAGGTAAAGCATGTAAGCATGTATATGTAAAGTaggtaaagcatgtagaggtaaagtaggtaaagcatgtagaggtaaagtaggtaaagcatgtagaggtaaagtAGGTAAAGCATGTAAGCATGTATATGTAAAGTaggtaaagcatgtagaggtaaagtAGGTAAAGCATGTAGAGCTAAAGTAgctaaagcatgtagaggtaaagtaggttaggcatgtagaggtaaagtagctaaagcatgtagaggtaaagtAGGTAAAGCATGTCGAGTTAAAGTaggtaaagcatgtagaggtaaagtaggtaaagcatgtagaggtaaagtaggtaaagcatgtagaggtaaacTAGGTAAAACATGTAGAGGTAAAGTAGGTAAACATGTAGAGGTAAAGTAGGTAAAGCATGTATATGTAAAGTAGG
>TU2633013
gtagctaaagcatgtagaggtaaagtaggtaaagcatgtagaggtataGTAgctaaagcatgtagaggtaaagtaggtaaagcatgtagaggtaaagtAGGTAAAGCATGTAGAGCTTGCCCaggtaaagcatgtagaggtaaagtagctaaagcatgtagaggtaaagtagctaaagcatgtagaggtaaagtaggtaaagcatgtagaggtataGTAgctaaagcatgtagaggtaaagtagctaaagcatgtagaggtaaagtaggtaaagcatgtagaggtaaagtaggtaaagcatgtagaggtaaagtaggtaaagcatgtagaggtaaagtaggtaaagcatgtaagca
>TU2633015
aggtaaagtaggtaaagcatgtagaggtaaagtAGGTAAAGCATGTAGAGCTTGCCCaggtaaagcatgtagaggtaaagtagataaagcatgtagaggtaaagtagataaagcatgtagaggtaaagtagataaagcatgtagaggtaaagtaggtaaagcatgtagaggtaaagtagctaaagcatgtagaggtaaagtaggtaaagcatgtagaggtaaagtAGGTAAAGCATGTAAGCATGTATA
>TU2633016
aggtaaagtaggtaaagcatgtagaggtaaagtAGGTAAAGCATGTAGAGCTTGCCCaggtaaagcatgtagaggtaaagtagataaagcatgtagaggtaaagtagataaagcatgtagaggtaaagtagataaagcatgtagaggtaaagtaggtaaagcatgtagaggtaaagtagctaaagcatgtagaggtaaagtaggtaaagcatgtagaggtaaagtAGGTAAAGCATGTAAGCATGTATATGTAAAGTaggtaaagcatgtagaggtaaagtaggtaaagcatgtagaggtaaagtAGGTAGAGCATGTAGAGGTAAAGTAGGTAAAGCATGTAAGCATGTATATGTAAAGTaggtaaagcatgtagaggtaaagtaggtaaagcatgtagaggtaaaattaggtaaagcatgtagaggtaaagtagctaaagcatgtagaggtaaaggaggtaaagcatgtagaggtaaaggaggtaaagcatgtagaggtaaagtagctaaagcatgtagaggtaaagtagctaaagcatgtagaggtaaagtaggtaaagcatgtagaggtataGTAgctaaagcatgtagaggtaaagtagctaaagcatgtagaggtaaagtaggtaaagcatgtagaggtaaagtaggtaaagcatgtagaggtaaagtaggtaaagcatgtagaggtaaagtaggtaaagcatgtaagca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2633014 False 1029 lncRNA 0.36 3 16899049 16901070
TU2633013 False 356 lncRNA 0.38 4 16899225 16901831
TU2633015 False 249 lncRNA 0.37 2 16899618 16900291
TU2633016 True 716 lncRNA 0.37 3 16899618 16901831

Neighbor

gene id symbol gene type direction distance location
LOC110488022 tfpi2 coding upstream 64397 16827065 ~ 16834652 (+)
LOC110488019 LOC106570458 coding upstream 112210 16785333 ~ 16788539 (+)
LOC110488017 LOC106570464 coding upstream 262160 16603599 ~ 16639641 (+)
LOC110488016 LOC106570467 coding upstream 411094 16463563 ~ 16487955 (+)
LOC110488013 LOC106570470 coding upstream 548006 16228573 ~ 16351043 (+)
LOC110488025 cdk6 coding downstream 392512 17294343 ~ 17364119 (+)
fam133b fam133b coding downstream 466937 17368768 ~ 17374337 (+)
LOC110488030 LOC106588950 coding downstream 478338 17380169 ~ 17388113 (+)
pex1 pex1 coding downstream 491523 17393354 ~ 17421512 (+)
clcc1 LOC106570443 coding downstream 802658 17704489 ~ 17713221 (+)
G2301606 NA non-coding upstream 62905 16835478 ~ 16836144 (+)
G2301630 NA non-coding upstream 72262 16826444 ~ 16826787 (+)
G2301627 NA non-coding upstream 74787 16824027 ~ 16824262 (+)
G2301625 NA non-coding upstream 76145 16822650 ~ 16822904 (+)
G2301623 NA non-coding upstream 78588 16820224 ~ 16820461 (+)
G2301706 NA non-coding downstream 48226 16950057 ~ 16950275 (+)
calcr LOC106588943 non-coding downstream 51110 16846734 ~ 16955570 (+)
G2301716 NA non-coding downstream 72602 16974433 ~ 16979513 (+)
G2301726 vps50 non-coding downstream 96470 16998301 ~ 17014938 (+)
G2301758 NA non-coding downstream 142082 17043913 ~ 17044839 (+)
G2301522 LOC106570460 other upstream 222378 16669607 ~ 16693934 (+)
G2301452 NA other upstream 373655 16524510 ~ 16525394 (+)
G2301841 NA other downstream 284734 17186565 ~ 17193117 (+)
G2303854 hsf1b other downstream 1875514 18777345 ~ 18783027 (+)
LOC110488049 recql4 other downstream 2099511 18998633 ~ 19016439 (+)
dgat1a LOC106570407 other downstream 2452380 19354178 ~ 19379095 (+)
G2304678 NA other downstream 2926386 19828217 ~ 19829961 (+)

Expression


Co-expression Network