G2301726 (vps50)


Basic Information

Item Value
gene id G2301726
gene name vps50
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 16998301 ~ 17014938 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2633076
GGTTCTTGATGAACTGCTCCATGTCATTCTCAGTCAGGTAGTAGGCTTTGATGTAGGTCTCCACAAAGTCCTTGTCAGGGATGGGCCTCATGTCCGTCAGCTTCTCAAGCTTCATCAGGAACTGCTGGAAGTCCAGCTGCATCAGGGCCCGCCCTTCGTTACTGCACTTCTTCACGTTACCATAgCCTTCCACCAGCGTCCTGTTGGCCAGACGGATGCAGTGTTCCCACAGGACATTAGACACAGGCAGAGGGACCCGGACGTGTCTGGACACATCACCCAGCCTCTTGTTAAACTCTTCAAACTCCTTTAACAGGACGTCAACGTACACGTTGTGCTGCGACATTATCTCCCTAATATCCCACTTAACTCCAGCCATCAGCAGCAGCATCTGTTCGTAGTCTAAAGCCTTGGCCGCCACCACCCAGTATATGGGTTTACGTAGCTCACTGGCCGTGGAGACAG

Function

symbol description
vps50 Predicted to enable SNARE binding activity. Predicted to be involved in endocytic recycling. Predicted to act upstream of or within retrograde transport, endosome to Golgi. Predicted to be part of EARP complex. Is expressed in head and heart. Orthologous to human VPS50 (VPS50 subunit of EARP/GARPII complex).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2633076 True 465 lncRNA 0.52 3 16998301 17014938

Neighbor

gene id symbol gene type direction distance location
calcr LOC106588943 coding upstream 42731 16846734 ~ 16955570 (+)
LOC110488022 tfpi2 coding upstream 163649 16827065 ~ 16834652 (+)
LOC110488019 LOC106570458 coding upstream 211462 16785333 ~ 16788539 (+)
LOC110488017 LOC106570464 coding upstream 361412 16603599 ~ 16639641 (+)
LOC110488016 LOC106570467 coding upstream 510346 16463563 ~ 16487955 (+)
LOC110488025 cdk6 coding downstream 279405 17294343 ~ 17364119 (+)
fam133b fam133b coding downstream 353830 17368768 ~ 17374337 (+)
LOC110488030 LOC106588950 coding downstream 365231 17380169 ~ 17388113 (+)
pex1 pex1 coding downstream 378416 17393354 ~ 17421512 (+)
clcc1 LOC106570443 coding downstream 689551 17704489 ~ 17713221 (+)
G2301716 NA non-coding upstream 18788 16974433 ~ 16979513 (+)
G2301706 NA non-coding upstream 48026 16950057 ~ 16950275 (+)
G2301682 NA non-coding upstream 96138 16901082 ~ 16902163 (+)
G2301681 NA non-coding upstream 96470 16899049 ~ 16901831 (+)
G2301758 NA non-coding downstream 28975 17043913 ~ 17044839 (+)
G2301764 NA non-coding downstream 35071 17050009 ~ 17051608 (+)
G2301773 NA non-coding downstream 46152 17061090 ~ 17063174 (+)
G2301774 NA non-coding downstream 46837 17061775 ~ 17062837 (+)
G2301775 NA non-coding downstream 47947 17062885 ~ 17064464 (+)
G2301522 LOC106570460 other upstream 321630 16669607 ~ 16693934 (+)
G2301452 NA other upstream 472907 16524510 ~ 16525394 (+)
G2301841 NA other downstream 171627 17186565 ~ 17193117 (+)
G2303854 hsf1b other downstream 1762407 18777345 ~ 18783027 (+)
LOC110488049 recql4 other downstream 1986404 18998633 ~ 19016439 (+)
dgat1a LOC106570407 other downstream 2339273 19354178 ~ 19379095 (+)
G2304678 NA other downstream 2813279 19828217 ~ 19829961 (+)

Expression


Co-expression Network