G2302298


Basic Information

Item Value
gene id G2302298
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 17449663 ~ 17454026 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2633712
gtgtttatatttttgttcagtgtagataaagaCATGGACAATGCAACAAGAGGTCAGTTTCCTTAAATCTTTAATGTAAACAGCAGGTTGAGGGGCTTTCAGACCTAGAGACAAACATCTGAAGGTATTAAATATGGAAAATAATAAATCATATTAAAAATGTTGACTCATGATTCGCTTTTAAATGACATTTCCATGAACCTCTAAATTGACGGCCACATAGTTcttgaaaacaaacaaacagagaacaaCTTCCCTTTACTAAAAACGCAAACGTCCCCCATACTGACTACTCGGCAATATCACTAAATTACACCATCAGCTTAACAAAGTAGTTTTTTGTTGCTCAATATTGCTTCGAAATGTTTACAGCAGTCGTAATCGAGCCTGATTGAACGGTATCAAGTCGGAGGAAAGAGATGTGTATGTCTGAGCAAGCATATATTACAGTTATGTTTGTTTGGGTATACAGCATGGTCAAAGCAGCCGTGATATAGGATAGAAGACTTCAGGAACTTCAGAGGCAGTTTCCCGTATTGTATAACAGTGTCAGGTTTTAGAATGACACACGTATTGTAACAGTCTACACAGGATGTGAAGTATGCAGAAAGATACCTGGGAGAAAAGTGTTAATACACACTTCAACATCTTAAATACACTTGATCCTTTCTTCCTCTCAGAGACATTAGCTGCCACGTAAGTGTGAATGGGGGACCGAGCCTgcttctgaaatggcaCACACAGAACGTTGGAGAACTAAAGACTAACGTCCCCAGCACTTCTTTATATTTTTATAAAACGCCACACCTCTCATGTAGAAAATCAACAAAACGAAAAAGGACAACCAGGCGATTATCAAAGAGAGTTTCTACAACAAACCCCAAGCAAATGGCAAATTCTTCAGTGAAGGAGGAGTGAAGAGTGAGCAGGGTTGAGGTGAGAAGAACACTGTGAAGACATCTTGGAGAGTGATGACCAAACAACAACGCTTAGAGAATGTTAGAACATCTCTGGTTTAGGACCCAAAGGACCCATATATATGCTTCCTGGTTTGGTCTCCATGGTGACGTGATGATTCAGTCAGTGGGCCACCTAGTGTCGCAAAGAGTCATTAAGCGCCGCAAACGTATTTAATCGCACCCTTTAATTCAAAAAGAAAGTTTAGCAAGTATAGCAAGAAGGAAGGAAACTAGTTCAATAGAATCCTTTTTCTGTCACTCATAATTTTCATCGTTATtagtttatttttcttttttcCAGTTGCCGTTTTAGGAAAGAGAGAGTTGGTAGGTCCAGTACAGTAGCTAGGGGATTTTGATCGGTTGGTTAGTTAGTTGCAGTCATAAACAAAGTCATAGTTGCTAGGCTCCTTGGGAATTGGGGGAGGGGCCTCTGGAATCTGGATGTTCTCCAGATCGAGGAGGCGGAGCTTCATCTCCATGGAGAGTAGGGTATCCATGTCTGACTTGGTGAAGTCACTGGTCATCTCCTTTCCCAGGAGGGCGTTCAGACCGTCCGTCCACACACAGTactgaggagagacaggagaggatgagtacacagacacacagacagagacacacacaaccgTACATCAGTGTATTAACATTAAGTGTTCCACGTTGTGCTGTAGAATGGAAAACCTCCATTGACTTCCTCTCAGTCCATCTCTGAATCCTGTCATTGGCTGGGTGACTGTGCCAACTGCTCAGTGCTTACCTCATGCTTGTCCGGAGCGATGAAGTTTAAATACTCGTCTGACTCGTAGAGGACGGAGAAGGCCAGCTCCAGAACCTCCTgtagcgagagggggagagagagacagggagggaggggagaatgtgggagtgacagagtgatagagggagataaggagggagagagagcggggagaaagagaggaggggaagggagagaaggagaggagagagagacagaaggagggagCTCAAATGTAGCACTGTCACTAACATGCTAATGAGCTCCTCACCACTCTAGTGTGTGCATCCCTCCCACTGTGCCTCTATAACACGTTCTCTCCCCAGCCACTCCAACATCAGATGGTTTGGCTGTCATGCTGGGTGCCAGGGGACAGGGGACGGGACACACCGAGCAAGGGGACAGCTAGGGGACAAACTGGGATGCAAAGGCACTTTGAGACGGTTATCCAACACAGGAGAAAAGTTGCCCCTAGAGTCTAACTTAATCCTTggagaaaaaacacacaaaagcTGACTTTGGATCAGATTATTGTGTTCTCCACACTGGTCAGAAGTACACAGGGGGATGCAAACAATGAGTCAGATGGGGAATGCATAGGGACACCTGAGAGAGTTCCACACAGAGAACACTGAAGGAGAGCTGATGTCTCATTTGTTAAAATCTGTTAAGGCTCCTTTGAAACAGATGTCTCTCGCTTGTCATCAAATGCCGCAGAACTAATTATAAATTCTGTAGCATATGGCACGCAACCACATAGATGGTGGAAGCGCATTGATCCAGAGcacctactgtatgtgtgttctaGTACTATGGGCCATGTTGTATTTGATTCAACACAATAGGTCAATCCAATAGGCCTGACAAACAGATATCTCTGAACTGTACCCTGGCTCTCCGTCTCCCAGACCCAGTATACTATAGAGTGATtccacgtcccaaatggcaccctgtatagtgcactttTTTGACCAcaaccctattacctatatagtacaCTTTTGACCAACGgcccacagggaatagggtgccattagagaCGAATCCTAGATCTATGGCTGCGCTGCCCGTGACCACAGAGGTTACTTTTTGTGTCTTACAGCTTGACTAATGAATGTTGCTCCGCTCGTGTTCTCATTCAAACAGCCCAAACAAGGTCGAgtcatccagccatccagccagccatcaagccatccatccatccatccatccaggcatccagccagccatccatccatccagtcagccatccattcagccagccagcccacaGACCTGTAGGCCCATTCTTTCAGACACCAGATTTATGGACAGAGTAATAAAGGTCCAGGCGAGAGAGGAGCGGTGCTCCTTTGTCTTCAAGGCTATATTTACAGGACCTAATCTGTCAGTGTCAGTAGAATGTATTGGTTTCTAGTCACTACTGAGACAGGACCTGCGGAGGCTGGGGCTTTCGTACCAGCAGACAGGCTGGCAGGACTGAACACAGCTATTTCAACTTGATTAAGATGTCTATACATAGAAGATAGAGCGATTTGGGTTTAACTTGGCTGGCATGTCAACATCTACTTTGATAGTGGGTGGATATACCTTGATATTGAGTTGGCTATCATGTTATCATATAAGGCACTGActgatactgactgactgatacactgacatatttttatttatttaatttaactaggcaaatcagttaagaacaaattcttatttacaatgacggcctaagccgaccaaaccctcccctaacccgggcgatactggtccaattgtgcaccgcccaatgggactcccaatcatggccggttgtgatacagcccgggatcgaagccgggtctgtagtgacagctctagcactgcgatgcagtgccttagaccgctgtgccactcaggagccctctactgtactgttatataaggcacagacacacagacatgcagtgccttagactgctgtgccactcaggagccctctactgtactgttatataaggcacagacatacagacatgcagtgccttagaccgctgtgccactcaggagccctctactgtactgttatataaggcacagacacacagagccttagaccgctgtgccactcaggagccctctactgtactgttatataaggcacagacacacagacatgctgtgccactctggagccctctactgtactgttatataaaggcacagacacacagacatgcagtgccttagaccgctgtgccactcaggagccctctactgtactgttatataaaggcacagacacacagacatgcagtgccttagaccgctgtgtcacTCAGGAGCcctctactgtactgttatataaaggcacagacacacagacatgcagtgccttagaccgctgtgtcacTCAGGAGCcctctactgtactgttatataaaggcacagacatacagacatgcagtgccttagaccgctgtgccactcaggagccctctactgtactgttatataaaggcacagacacacagacatgcagtGCCGTGAAAAATGATTTGCCCTCTTTCTGATTGTCT

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2633712 True 4274 lncRNA 0.46 2 17449663 17454026

Neighbor

gene id symbol gene type direction distance location
pex1 pex1 coding upstream 28151 17393354 ~ 17421512 (+)
LOC110488030 LOC106588950 coding upstream 61550 17380169 ~ 17388113 (+)
fam133b fam133b coding upstream 75326 17368768 ~ 17374337 (+)
LOC110488025 cdk6 coding upstream 89504 17294343 ~ 17364119 (+)
calcr LOC106588943 coding upstream 494093 16846734 ~ 16955570 (+)
clcc1 LOC106570443 coding downstream 250463 17704489 ~ 17713221 (+)
LOC110488036 LOC106570445 coding downstream 308980 17763006 ~ 17784596 (+)
LOC110488037 LOC106570446 coding downstream 333751 17787777 ~ 17812354 (+)
LOC110489398 LOC106570447 coding downstream 408403 17862429 ~ 18232900 (+)
ctnnal1 LOC106588976 coding downstream 870491 18324517 ~ 18449153 (+)
G2302297 NA non-coding upstream 82887 17365053 ~ 17366776 (+)
G2302330 NA non-coding upstream 119863 17329588 ~ 17329800 (+)
G2302329 NA non-coding upstream 120516 17328706 ~ 17329147 (+)
G2302327 LOC100194703 non-coding upstream 122318 17327047 ~ 17327345 (+)
G2302417 NA non-coding downstream 81618 17535644 ~ 17537114 (+)
G2302427 NA non-coding downstream 116925 17570951 ~ 17572613 (+)
G2302430 NA non-coding downstream 122180 17576206 ~ 17576594 (+)
G2302462 rp9 non-coding downstream 216225 17670251 ~ 17671322 (+)
G2302505 NA non-coding downstream 227418 17681444 ~ 17681820 (+)
G2301841 NA other upstream 256546 17186565 ~ 17193117 (+)
LOC110488022 tfpi2 other upstream 615278 16827065 ~ 16834652 (+)
LOC110488019 LOC106570458 other upstream 661124 16785333 ~ 16788539 (+)
G2301522 LOC106570460 other upstream 772992 16669607 ~ 16693934 (+)
LOC110488017 LOC106570464 other upstream 810022 16603599 ~ 16639641 (+)
G2303854 hsf1b other downstream 1323319 18777345 ~ 18783027 (+)
LOC110488049 recql4 other downstream 1547316 18998633 ~ 19016439 (+)
dgat1a LOC106570407 other downstream 1900185 19354178 ~ 19379095 (+)
G2304678 NA other downstream 2374191 19828217 ~ 19829961 (+)
G2305956 NA other downstream 3099307 20553333 ~ 20553684 (+)

Expression


Co-expression Network