G2302427


Basic Information

Item Value
gene id G2302427
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 17570951 ~ 17572613 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2633853
ATGTCAACACTACTATGGGtcatggtctaaagtagtgcaatatattagggaatagggtgttgcTTGGGAGGcacacattctaaatgtaaatGTGGTGGGTTtgagtttatttacattttacagggacagtgcacattaatcaacatttcagtaaaagtgccggttttagccagccggcaaattttcaaccgcagtccctgggcaggttattaaaaacaattacaatatagacaatcaatgagcagtgagcacacgcagagcaacataggacaagcaagacatagcatacagacagagcaacataggacaagcaagacgtagcatacagacagagcaacataggacaagcaagacatagcatacagacagagcaacataggacaagcaagacgtagcatacagacagagaaacataggacaagccagacgtagcatacagacagagcaacataggacaagcaagatgtagcatacagacagagcaacatagaacaaaaagcagcaggACAAATTTCGTAAAAGATACACTAACAGAATGGAAGGTTCTAGTTTTTATATCCagttagagagagtgtgtgtttggtctatcagagagagtgtgtgtttggtctatcagagagagtgtgtgtttggtctatcagagagagtgtgtgtttggtctatcagagagagtgtgtgtttggtctatcagagagagtgtgtgtttggtctatcagagagagtgtgtgtttggtctatcagagaaagtgtgtgtttgttctatcagagagagtgtgtgtgtttggtctatcagagagagtgtgtgtttgtatcaggGGAGCTGCTACTGACTGGGAAGTCTCTCTGGGCTTGGGGGCTTAATGAGGATGTCAtgtagccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtttcagaCCACTGACAGTAAACGCTGTGTCCAGAGCCCCGGGCTAGCCTATAATGAGGGTCTGCTGGGAAAGACAAGCATTTGGTTGGATTCAGGGCTGTTCAGTACAGTGGGGTGACTGGAGACGGCTGACTGTGTGTGATTGAATGGGGGGGTGTacgtgtgtgagaaagagagggtgtgtgtgtgtatgtgtgtgtcttgctTTGACTGTGTGAGTCTCCAATGTGTGTTTTGACTCTGCAATCACACAGCATGaccctggctctcctctccttcccaggctggctctcctctccctccctggctggctctcctctccctccctggctggctctcctctccctcccaggctgactctcctctccctcccaggccccactctcctctccctccctggctctcctctccctcccaggctctcctctccctccctggctctcctctcctctccctccctggctctcctctcctctccctccctggctctcctctcctctccctcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2633853 True 1455 lncRNA 0.49 3 17570951 17572613

Neighbor

gene id symbol gene type direction distance location
pex1 pex1 coding upstream 149439 17393354 ~ 17421512 (+)
LOC110488030 LOC106588950 coding upstream 182838 17380169 ~ 17388113 (+)
fam133b fam133b coding upstream 196614 17368768 ~ 17374337 (+)
LOC110488025 cdk6 coding upstream 210792 17294343 ~ 17364119 (+)
calcr LOC106588943 coding upstream 615381 16846734 ~ 16955570 (+)
clcc1 LOC106570443 coding downstream 131876 17704489 ~ 17713221 (+)
LOC110488036 LOC106570445 coding downstream 190393 17763006 ~ 17784596 (+)
LOC110488037 LOC106570446 coding downstream 215164 17787777 ~ 17812354 (+)
LOC110489398 LOC106570447 coding downstream 289816 17862429 ~ 18232900 (+)
ctnnal1 LOC106588976 coding downstream 751904 18324517 ~ 18449153 (+)
G2302417 NA non-coding upstream 33837 17535644 ~ 17537114 (+)
G2302298 NA non-coding upstream 116925 17449663 ~ 17454026 (+)
G2302297 NA non-coding upstream 204175 17365053 ~ 17366776 (+)
G2302330 NA non-coding upstream 241151 17329588 ~ 17329800 (+)
G2302430 NA non-coding downstream 3593 17576206 ~ 17576594 (+)
G2302462 rp9 non-coding downstream 97638 17670251 ~ 17671322 (+)
G2302505 NA non-coding downstream 108831 17681444 ~ 17681820 (+)
G2302506 NA non-coding downstream 109751 17682364 ~ 17683057 (+)
G2302520 NA non-coding downstream 124203 17696816 ~ 17699787 (+)
G2301841 NA other upstream 377834 17186565 ~ 17193117 (+)
LOC110488022 tfpi2 other upstream 736566 16827065 ~ 16834652 (+)
LOC110488019 LOC106570458 other upstream 782412 16785333 ~ 16788539 (+)
G2301522 LOC106570460 other upstream 894280 16669607 ~ 16693934 (+)
LOC110488017 LOC106570464 other upstream 931310 16603599 ~ 16639641 (+)
G2303854 hsf1b other downstream 1204732 18777345 ~ 18783027 (+)
LOC110488049 recql4 other downstream 1428729 18998633 ~ 19016439 (+)
dgat1a LOC106570407 other downstream 1781598 19354178 ~ 19379095 (+)
G2304678 NA other downstream 2255604 19828217 ~ 19829961 (+)
G2305956 NA other downstream 2980720 20553333 ~ 20553684 (+)

Expression


Co-expression Network