G2302462 (rp9)


Basic Information

Item Value
gene id G2302462
gene name rp9
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 17670251 ~ 17671322 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2633894
ATGACCTTCACCTCCTTCCCCAGAGGCATCCACAGCCCTTTGGTGGGGGCGTGAGCCAGGAAGTCCCTAGCATCCTCATTTCCTGGATCAGCAGGAATACAGTCCTCTGGTTTGTACTCCTCCGCCTTTATGAGTCCAGGAGGAGGTTTTTCATAAAAGGTCTCCAAATGCTTCAGCTTTTGCACTTCTTGGTTGAGTTTTCTCGCTTGTTTCTTGAGTTTTTCTACATCGTGTTTTGATTCCTTGTGCCTTTTGCGGTCCCCTCTGTCCTCCGAGTCTCTCGATCTCTTTCTACTAGACATTGCAATGTCATTGGGTAACTAGCTATGTTTATGAAATAACCGTTTAATTTGAGTTTGATACGATTTCCAATCACAAATTCGTTGAAGTGAATCACTTTTTAGAGAAAATACATTCGGGACTACGTCAGGACATTTTTCTCGAACTATGCACAGCTA

Function

symbol description
rp9 Predicted to act upstream of or within RNA splicing. Human ortholog(s) of this gene implicated in retinitis pigmentosa 9. Orthologous to human RP9 (RP9 pre-mRNA splicing factor).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2633894 True 458 lncRNA 0.44 3 17670251 17671322

Neighbor

gene id symbol gene type direction distance location
pex1 pex1 coding upstream 248739 17393354 ~ 17421512 (+)
LOC110488030 LOC106588950 coding upstream 282138 17380169 ~ 17388113 (+)
fam133b fam133b coding upstream 295914 17368768 ~ 17374337 (+)
LOC110488025 cdk6 coding upstream 310092 17294343 ~ 17364119 (+)
calcr LOC106588943 coding upstream 714681 16846734 ~ 16955570 (+)
clcc1 LOC106570443 coding downstream 33167 17704489 ~ 17713221 (+)
LOC110488036 LOC106570445 coding downstream 91684 17763006 ~ 17784596 (+)
LOC110488037 LOC106570446 coding downstream 116455 17787777 ~ 17812354 (+)
LOC110489398 LOC106570447 coding downstream 191107 17862429 ~ 18232900 (+)
ctnnal1 LOC106588976 coding downstream 653195 18324517 ~ 18449153 (+)
G2302430 NA non-coding upstream 93657 17576206 ~ 17576594 (+)
G2302427 NA non-coding upstream 97638 17570951 ~ 17572613 (+)
G2302417 NA non-coding upstream 133137 17535644 ~ 17537114 (+)
G2302298 NA non-coding upstream 216225 17449663 ~ 17454026 (+)
G2302297 NA non-coding upstream 303475 17365053 ~ 17366776 (+)
G2302505 NA non-coding downstream 10122 17681444 ~ 17681820 (+)
G2302506 NA non-coding downstream 11042 17682364 ~ 17683057 (+)
G2302520 NA non-coding downstream 25494 17696816 ~ 17699787 (+)
G2302521 NA non-coding downstream 29000 17700322 ~ 17700544 (+)
G2302526 NA non-coding downstream 30678 17702000 ~ 17702397 (+)
G2301841 NA other upstream 477134 17186565 ~ 17193117 (+)
LOC110488022 tfpi2 other upstream 835866 16827065 ~ 16834652 (+)
LOC110488019 LOC106570458 other upstream 881712 16785333 ~ 16788539 (+)
G2301522 LOC106570460 other upstream 993580 16669607 ~ 16693934 (+)
LOC110488017 LOC106570464 other upstream 1030610 16603599 ~ 16639641 (+)
G2303854 hsf1b other downstream 1106023 18777345 ~ 18783027 (+)
LOC110488049 recql4 other downstream 1330020 18998633 ~ 19016439 (+)
dgat1a LOC106570407 other downstream 1682889 19354178 ~ 19379095 (+)
G2304678 NA other downstream 2156895 19828217 ~ 19829961 (+)
G2305956 NA other downstream 2882011 20553333 ~ 20553684 (+)

Expression


Co-expression Network