G2302506


Basic Information

Item Value
gene id G2302506
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 17682364 ~ 17683057 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2633939
tgacccttgtattttatttttgcattgtCTCCATGCACACTGACACGTCGACACAGACAAACTTTCACTCCACCATTTGCTCACACACaatatgcacatacattcatACGGACTCTAAACACATGCACTCATATACAATCGTCAtgtatgctgctgctgctactctgttcatcatatatcctgatgcctagtcaccttacatatctacctccatcactccagtatccctacacattgtaaatattgtattggaactgaccctgtatatagcgtcttactttcttgtgttcttattttaatttattgtgtttttgttctaccttacgTTATTACTGCATTTTTGGGTTTAGATttggcaagaaaggcatttcagtgtacttgtgcatgtgacattaaaacttgaaacgtgagaggagacagacaacatTCTTCCTCTTATCTTCAGAGTGCTGCGCCCGCTTCAGGGGTATCAGTTCTTACAACCACGCATGTCTATGGGGGCCTGGTAGCGTCGCACGTACACAGCTTGTGGAGATCTTTTACACACTTATTTTATGCCAGGGCGAGTGG
>TU2633940
tgacccttgtattttatttttgcattgtCTCCATGCACACTGACACGTCGACACAGACAAACTTTCACTCCACCATTTGCTCACACACaatatgcacatacattcatACGGACTCTAAACACATGCACTCATATACAATCGTCAtgtatgctgctgctgctactctgttcatcatatatcctgatgcctagtcaccttacatatctacctccatcactccagtatccctacacattgtaaatattgtattggaactgaccctgtatatagcgtcttactttcttgtgttcttattttaatttattgtgtttttgttctaccttacgTTATTACTGCATTTTTGGGTTTAGATttggcaagaaaggcatttcagtgtacttgtgcatgtgacattaaaacttgaaacgtgagaggagacagacaacatTCTTCCTCTTATCTTCAGAGTGCTGCGCCCGCTTCAGGGGTATCAGTTCTTACAACCACGCATGTCTATGGGGGCCTGGTAGCGTCGCACGTACACAGCTTGTGGAGATCTTTTACACACTTATTTTATGCCAGGGCGAGTGGCCGGTGACCTTGAAATTGGAGGGTAAAAATACCTTGGTGAAAAAGTGGCTAAGGAGAACTCGCTTACCAGGAAGTCACACGACGGTGGGAAAATATATCAACAATATAGTCAGGTTTTTAATTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2633939 False 570 lncRNA 0.41 1 17682364 17682933
TU2633940 True 694 lncRNA 0.41 1 17682364 17683057

Neighbor

gene id symbol gene type direction distance location
pex1 pex1 coding upstream 260852 17393354 ~ 17421512 (+)
LOC110488030 LOC106588950 coding upstream 294251 17380169 ~ 17388113 (+)
fam133b fam133b coding upstream 308027 17368768 ~ 17374337 (+)
LOC110488025 cdk6 coding upstream 322205 17294343 ~ 17364119 (+)
calcr LOC106588943 coding upstream 726794 16846734 ~ 16955570 (+)
clcc1 LOC106570443 coding downstream 21432 17704489 ~ 17713221 (+)
LOC110488036 LOC106570445 coding downstream 79949 17763006 ~ 17784596 (+)
LOC110488037 LOC106570446 coding downstream 104720 17787777 ~ 17812354 (+)
LOC110489398 LOC106570447 coding downstream 179372 17862429 ~ 18232900 (+)
ctnnal1 LOC106588976 coding downstream 641460 18324517 ~ 18449153 (+)
G2302505 NA non-coding upstream 544 17681444 ~ 17681820 (+)
G2302462 rp9 non-coding upstream 11042 17670251 ~ 17671322 (+)
G2302430 NA non-coding upstream 105770 17576206 ~ 17576594 (+)
G2302427 NA non-coding upstream 109751 17570951 ~ 17572613 (+)
G2302417 NA non-coding upstream 145250 17535644 ~ 17537114 (+)
G2302520 NA non-coding downstream 13759 17696816 ~ 17699787 (+)
G2302521 NA non-coding downstream 17265 17700322 ~ 17700544 (+)
G2302526 NA non-coding downstream 18943 17702000 ~ 17702397 (+)
G2302470 NA non-coding downstream 34437 17717494 ~ 17719228 (+)
G2302616 NA non-coding downstream 193900 17876957 ~ 17880270 (+)
G2301841 NA other upstream 489247 17186565 ~ 17193117 (+)
LOC110488022 tfpi2 other upstream 847979 16827065 ~ 16834652 (+)
LOC110488019 LOC106570458 other upstream 893825 16785333 ~ 16788539 (+)
G2301522 LOC106570460 other upstream 1005693 16669607 ~ 16693934 (+)
LOC110488017 LOC106570464 other upstream 1042723 16603599 ~ 16639641 (+)
G2303854 hsf1b other downstream 1094288 18777345 ~ 18783027 (+)
LOC110488049 recql4 other downstream 1318285 18998633 ~ 19016439 (+)
dgat1a LOC106570407 other downstream 1671154 19354178 ~ 19379095 (+)
G2304678 NA other downstream 2145160 19828217 ~ 19829961 (+)
G2305956 NA other downstream 2870276 20553333 ~ 20553684 (+)

Expression


Co-expression Network