G2302470


Basic Information

Item Value
gene id G2302470
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 17717494 ~ 17719228 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2633903
cattaagtagccctattttgagatgtgaggtatcatgatctctttcaataatgacaggaatggaggtggtctttatcctagacggaagccacttctgaataaaaggcacaggacagcccgcttggagtttgccagaaggcacctaaagactctcagaacatgaggactctgaccatgagaaacaagattctctgctctgatgaaaacCAAGATTACGGTATTGCCAGCCTAGAGTATTTGAAAATAACCTCTGATTCGCTATGCATTGATACTCCAAAATGTAAATTCTTAAACTGTGTGCTCATGTTGCGTGCCTGTTGTCATGATGTGCCCTGGAGGGAGGATCAtagccccctcccctctctctccaGTAAGACACATGGTAGAAACTGCCATGCAGTATTGAGGGAGAAAGTCTACCAGAAAAGAGCTTCTCTTAGTTTAAAACTCCTAATCCCAAAATGGGAGAACTAAACAATATTTctacttttgagaatgtgggaatggtctGTGGACAGTCATGTTGAGTGCGTTTCATTTGGTACGCGCGCATAGACATTACGTCGTCGTCATGGAACTGCCCTTTTCTACTCCAGAGTATAAAACCACCCGTGATGAAATGTACATTTCATGCCAAAGAGACCCACCTTAAGCCGGACGTCTCGAATGGTTAAGAAGTTAGAGAACGCCCAACGTTGGAATGGCTACAATTCTATAATAACATCGACCATATAAGAACATTtccgaatggtactctgaagtatccattctaaccacctaCAACCACGAAAGGCGTGACTTTTGGGAAAGTTAACCAGACACTTTGATGAACTCTACAGGACGATTGAgtattccaacagagaagacaacgtCATACGGGCATAAATATATACATAGCAATTATTCTTGAATGAGTGGCCTTAAATGTGCGAAGGATTAGCATTTCCATAATTATAATTATCCACTGTGTGTAGTGAATCCattttgtctttcccgctctCGCAGTCCacacccctttcctttgtctaccaagccgtcatatctgcTTGCCCCACTAAGGACTTTTCTATCactgttagtaaccaatatctactgtttgttttatcttattctgtgtgattatttggtgaataaataatttaaacaattta
>TU2633902
tttagttttgcccaacctaggtcgaggcacagacacggtctcaatggtgatagctgagctgactacactgactgtgctcgtggcagactccactatgctggcaggctggctaacagcctgctgcctggcctgcaccctatttcattgtggagctagaggagttagagccctgtctatgttggtagataagatgagagcacccctccagaaagagggccaattatctacaaattctatcttttgggaggggcagaaaacagttttcaaccagcgattgagttgtgagagaCTGCTGACTCCACAGAGAAACTGAaccatcgggggagaagggccttggtcagggacgtgaccaagaactcaatggtcactctgacatagcgctagagttcctctgtggagatgggagaaccttccagaaggacaaccatctctgcagcactccaccaaccaggcctttatggtagagtggccagacggaagccacttctgaataaaaggcacaggacagcccgcttggagtttgccagaaggcacctaaagactctcagaacatgaggactctgaccatgagaaacaagattctctgctctgatgaaaacCAAGATTACGGTATTGCCAGCCTAGAGTATTTGAAAATAACCTCTGATTCGCTATGCATTGATACTCCAAAATGTAAATTCTTAAACTGTGTGCTCATGTTGCGTGCCTGTTGTCATGATGTGCCCTGGAGGGAGGATCAtagccccctcccctctctctccaGTAAGACACATGGTAGAAACTGCCATGCAGTATTGAGGGAGAAAGTCTACCAGAAAAGAGCTTCTCTTAGTTTAAAACTCCTAATCCCAAAATGGGAGAACTAAACAATATTTctacttttgagaatgtgggaatggtctGTGGACAGTCATGTTGAGTGCGTTTCATTTGGTACGCGCGCATAGACATTACGTCGTCGTCATGGAACTGCCCTTTTCTACTCCAGAGTATAAAACCACCCGTGATGAAATGTACATTTCATGCCAAAGAGACCCACCTTAAGCCGGACGTCTCGAATGGTTAAGAAGTTAGAGAACGCCCAACGTTGGAATGGCTACAATTCTATAATAACATCGACCATATAAGAACATTtccgaatggtactctgaagtatccattctaaccacctaCAACCACGAAAGGCGTGACTTTTGGGAAAGTTAACCAGACACTTTGATGAACTCTACAGGACGATTGAgtattccaacagagaagacaacgtCATACGGGCATAAATATATACATAGCAATTATTCTTGAATGAGTGGCCTTAAATGTGCGAAGGATTAGCATTTCCATAATTATAATTATCCACTGTGTGTAGTGAATCCattttgtctttcccgctctCGCAGTCCacacccctttcctttgtctaccaagccgtcatatctgcTTGCCCCACTAAGGACTTTTCTATCactgttagtaaccaatatctactgtttgttttatcttattctgtgtgattatttggtgaataaataatttaaacaattta

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2633903 False 1151 lncRNA 0.41 3 17717494 17719228
TU2633902 True 1543 lncRNA 0.45 3 17717603 17719228

Neighbor

gene id symbol gene type direction distance location
clcc1 LOC106570443 coding upstream 4273 17704489 ~ 17713221 (+)
pex1 pex1 coding upstream 295982 17393354 ~ 17421512 (+)
LOC110488030 LOC106588950 coding upstream 329381 17380169 ~ 17388113 (+)
fam133b fam133b coding upstream 343157 17368768 ~ 17374337 (+)
LOC110488025 cdk6 coding upstream 357335 17294343 ~ 17364119 (+)
LOC110488036 LOC106570445 coding downstream 43778 17763006 ~ 17784596 (+)
LOC110488037 LOC106570446 coding downstream 68549 17787777 ~ 17812354 (+)
LOC110489398 LOC106570447 coding downstream 143201 17862429 ~ 18232900 (+)
ctnnal1 LOC106588976 coding downstream 605289 18324517 ~ 18449153 (+)
LOC110488042 LOC106570416 coding downstream 829725 18548953 ~ 18557288 (+)
G2302526 NA non-coding upstream 15097 17702000 ~ 17702397 (+)
G2302521 NA non-coding upstream 16950 17700322 ~ 17700544 (+)
G2302520 NA non-coding upstream 17707 17696816 ~ 17699787 (+)
G2302506 NA non-coding upstream 34437 17682364 ~ 17683057 (+)
G2302505 NA non-coding upstream 35674 17681444 ~ 17681820 (+)
G2302616 NA non-coding downstream 157729 17876957 ~ 17880270 (+)
G2302641 NA non-coding downstream 200506 17919734 ~ 17920809 (+)
G2302696 NA non-coding downstream 273858 17993086 ~ 17993557 (+)
G2302764 NA non-coding downstream 393617 18112845 ~ 18113057 (+)
G2302767 NA non-coding downstream 396339 18115567 ~ 18115876 (+)
G2301841 NA other upstream 524377 17186565 ~ 17193117 (+)
LOC110488022 tfpi2 other upstream 883109 16827065 ~ 16834652 (+)
LOC110488019 LOC106570458 other upstream 928955 16785333 ~ 16788539 (+)
G2301522 LOC106570460 other upstream 1040823 16669607 ~ 16693934 (+)
LOC110488017 LOC106570464 other upstream 1077853 16603599 ~ 16639641 (+)
G2303854 hsf1b other downstream 1058117 18777345 ~ 18783027 (+)
LOC110488049 recql4 other downstream 1282114 18998633 ~ 19016439 (+)
dgat1a LOC106570407 other downstream 1634983 19354178 ~ 19379095 (+)
G2304678 NA other downstream 2108989 19828217 ~ 19829961 (+)
G2305956 NA other downstream 2834105 20553333 ~ 20553684 (+)

Expression


Co-expression Network