G2302641


Basic Information

Item Value
gene id G2302641
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 17919734 ~ 17920809 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2634099
acactacactacactcaaccactaccctacactacactaaaccACCATACGCTAAGAAGAATAGTAATTAGACTGTTTTAGCTCTCTGAACAGAAGACTAGTTATTAGACTGTTTTAGCTCTCTGAACAGAAGACTAGTTATTAGACTGTTTTAGCTCTCTGAACAGAAGACTAGTTATTAGACTGTTTTAGCTCTCTGAACAGAAGACTAGTTATTAGACTGTTTTAGCTCTCTGAACAGAAGACTAGTTATTAGACTGTTTTAGCTCTGAACAGAAGACTAGTTACTAAACTGTTTTAGCTTTCTGAACAGAAGACTAGTAATTAGACTGTTTTAGCTCTCTGAACAGAAGACTAGAAATTAACTTGGGAGGTTAACTCAAGTTTTCAGGCAAGGATACTCGACCGTTGGCAATCTTTTTAGATTTTTTGGAGGATGGGATGCAGTTTCAG
>TU2634102
acactacactacactcaaccactaccctacactacactaaaccACCATACGCTAAGAAGAATAGTAATTAGACTGTTTTAGCTCTCTGAACAGAAGACTAGTTATTAGACTGTTTTAGCTCTCTGAACAGAAGACTAGTTATTAGACTGTTTTAGCTCTCTGAACAGAAGACTAGTTATTAGACTGTTTTAGCTCTGAACAGAAGACTAGTTATTAGACTGTTTTAGCTCTCTGAACAGAAGACTAGTTATTAGACTGTTTTAGCTCTGGACAAAGGACTAGTTATTAGACTGTTTTAGCTCTCTGAACAGAAGACTAGTTATTAGACTGTTTTAGCTCTCTGAACAGAAGACTAGTTATTAGACTGTTTTAGCTCTCTGAACAGAAGACTAGTTATTAGACTGTTTTAGCTCTGAACAGAAGACTAGTTACTAAACTGTTTTAGCTTTCTGAACAGAAGACTAGTAATTAGACTGTTTTAGCTCTCTGAACAGAAGACTAGAAATTAACTTGGGAGGTTAACTCAAGTTTTCAGGCAAGGATACTCGACCGTTGGCAATCTTTTTAGATTTTTTGGAGGATGGGATGCAGTTTCAG
>TU2634105
acactacactacactcaaccactaccctacactacactaaaccACCATACGCTAAGAAGAATAGTAATTAGACTGTTTTAGCTCTCTGAACAGAAGACTAGTTATTAGACTGTTTTAGCTCTCTGAACAGAAGACTAGTTATTAGACTGTTTTAGCTCTCTGAACAGAAGACTAGTTATTAGACTGTTTTAGCTCTCTGAACAGAAGACTAGTTATTAGACTGTTTTAGCTCTCTGAACAGAAGACTAGTTATTAGACTGTTTTAGCTCTGAACAGAAGACTAGTTACTAAACTGTTTTAGCTTTCTGAACAGAAGACTAGTAATTAGACTGTTTTAGCTCTCTGAACAGAAGACTAGAAATTAACTTGGGAGGTTAACTCAAGTTTTCAGGCAAGGATACTCGACCGTTGGCAATCTTTTTAGATTTTTTGGAGGATGGGATGCAGTTTCAG
>TU2634107
acactacactacactcaaccactaccctacactacactaaaccACCATACGCTAAGAAGAATAGTAATTAGACTGTTTTAGCTCTCTGAACAGAAGACTAGTTATTAGACTGTTTTAGCTCTCTGAACAGAATACTAGTTATTAGACTGTTTTAGCTCTCTGAACAGAAGACTAGTTATTAGACTGTTTTAGCTCTGGACAAAGGACTAGTTATTAGACTGTTTTAGCTCTCTGAACAGAAGACTAGTTATTAGACTGTTTTAGCTCTCTGAACAGAAGACTAGTTAATAGACTGTTTTAGCTCTCTGAACAGAAGACTAGTTAATAGACTGTTTTAGCTCTCTGAACAGAAGACTAGTTATTAGACTGTTTTAGCTCTCTGAACAGAAGACTAGTTATTAGACTGTTTTAGCTCTGAACAGAAGACTAGTTATTAGACTGTTTTAGCTCTCTGAACAGAAGACTAGTTATTAGACTGTTTTAGCTCTGGACAAAGGACTAGTTATTAGACTGTTTTAGCTCTCTGAACAGAAGACTAGTTATTAGACTGTTTTAGCTCTCTGAACAGAAGACTAGTTATTAGACTGTTTTAGCTCTCTGAACAGAAGACTAGTTATTAGACTGTTTTAGCTCTGAACAGAAGACTAGTTACTAAACTGTTTTAGCTTTCTGAACAGAAGACTAGTAATTAGACTGTTTTAGCTCTCTGAACAGAAGACTAGAAATTAACTTGGGAGGTTAACTCAAGTTTTCAGGCAAGGATACTCGACCGTTGGCAATCTTTTTAGATTTTTTGGAGGATGGGATGCAGTTTCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2634099 False 453 lncRNA 0.37 2 17919734 17920809
TU2634102 False 597 lncRNA 0.37 3 17919734 17920809
TU2634105 False 453 lncRNA 0.37 3 17919734 17920809
TU2634107 True 817 lncRNA 0.36 4 17919734 17920809

Neighbor

gene id symbol gene type direction distance location
LOC110488037 LOC106570446 coding upstream 107380 17787777 ~ 17812354 (+)
LOC110488036 LOC106570445 coding upstream 135138 17763006 ~ 17784596 (+)
clcc1 LOC106570443 coding upstream 206513 17704489 ~ 17713221 (+)
pex1 pex1 coding upstream 498222 17393354 ~ 17421512 (+)
LOC110488030 LOC106588950 coding upstream 531621 17380169 ~ 17388113 (+)
ctnnal1 LOC106588976 coding downstream 403708 18324517 ~ 18449153 (+)
LOC110488042 LOC106570416 coding downstream 628144 18548953 ~ 18557288 (+)
LOC110488043 LOC106588968 coding downstream 686387 18607196 ~ 18669361 (+)
LOC100170213 LOC100170213 coding downstream 800183 18720992 ~ 18732451 (+)
si:ch211-80h18.1 LOC100499602 coding downstream 820888 18741697 ~ 18768506 (+)
G2302616 NA non-coding upstream 39464 17876957 ~ 17880270 (+)
G2302470 NA non-coding upstream 200506 17717494 ~ 17719228 (+)
G2302526 NA non-coding upstream 217337 17702000 ~ 17702397 (+)
G2302521 NA non-coding upstream 219190 17700322 ~ 17700544 (+)
G2302520 NA non-coding upstream 219947 17696816 ~ 17699787 (+)
G2302696 NA non-coding downstream 72277 17993086 ~ 17993557 (+)
G2302764 NA non-coding downstream 192036 18112845 ~ 18113057 (+)
G2302767 NA non-coding downstream 194758 18115567 ~ 18115876 (+)
G2302769 NA non-coding downstream 197011 18117820 ~ 18118048 (+)
G2302780 NA non-coding downstream 212275 18133084 ~ 18133321 (+)
G2301841 NA other upstream 726617 17186565 ~ 17193117 (+)
LOC110488022 tfpi2 other upstream 1085349 16827065 ~ 16834652 (+)
LOC110488019 LOC106570458 other upstream 1131195 16785333 ~ 16788539 (+)
G2301522 LOC106570460 other upstream 1243063 16669607 ~ 16693934 (+)
LOC110488017 LOC106570464 other upstream 1280093 16603599 ~ 16639641 (+)
G2303854 hsf1b other downstream 856536 18777345 ~ 18783027 (+)
LOC110488049 recql4 other downstream 1080533 18998633 ~ 19016439 (+)
dgat1a LOC106570407 other downstream 1433402 19354178 ~ 19379095 (+)
G2304678 NA other downstream 1907408 19828217 ~ 19829961 (+)
G2305956 NA other downstream 2632524 20553333 ~ 20553684 (+)

Expression


Co-expression Network