G2303768


Basic Information

Item Value
gene id G2303768
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 18768654 ~ 18800607 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2635356
ATTTCAAAACAACCATGTTTATTTAAAACATACCATACACAAAATATTGTTCTCATGCGTAATTTGGGTTTCTCAGGCTGTGCCATTGTGTTATGGTGGAACTGGTAAAAGTGCTTAACAATGTACAATTCAGCACATCAATATACTCCAATACTTCCCCTTTCTTAAAAGGAgttaattacaaaaaaaaaaacagtttgaaCAAACTTAAAACAAACTCTGGGGGAAGTATGCGTAAATTCACAAAGTTCCTCACACTTGAACCAAGATTCAATGATTCATTTGTTTTCCTAGACAAGGATTTGACTATAAAATAATAACGCTGGAGGGAAACAGGCTTCCAGAAAATGAATGAATAGCATATGATTGATAAGACATTGgagaatatacagtgcattcggacagtattcagacccctttacttgtTTTTACGTTACAGGGCTCCcaagtgacgcagcggtctaaggcactgcatctcagtgctagaggtgtcactacagacaccctggttcgattccaggctgtatcacaaccagccatgattgggagtcccatagggcggaacacaattggcccagcatcattcGGTTTTGGaaggtgtaggccgtcattgttaaaaaaaactttaaaagccttaatctaaaatggattaaataaaaacatttcctcaacctacaaacaataccccataataacaaagtgaaaacaggtttttggatgtttattttttatttataaaaaactaaacagaaatactttatttacaaaaatattcagaccctttgttatgagacttggtgctcggtgcatcctgtttccattgatgatccttgagatgtttctacaacttgattggagtccacctgtggtaaattcatttgattggacatgatatggcaaggcacacacttgtctatataaggtctgaaggttgacagtgcgtgtcagggcaaaaaccaagccatgaggttgaaggaattgtccgtagacctcagagacaggattgtgtcaagggacggtaccaaaaaatgtctgcagcattgaaggtccccaagaacacagtttcctccatcattcttaaatgcgagcggtttggaatcaccaagactattcctacagctggccgcccggccaaactgagcaattgggggtgaagggccttggtaagggaggtgaccaagaacccaatggtcactctgacagagctccagagttcctctgtggagatgggaga
>TU2635359
ATTTCAAAACAACCATGTTTATTTAAAACATACCATACACAAAATATTGTTCTCATGCGTAATTTGGGTTTCTCAGGCTGTGCCATTGTGTTATGGTGGAACTGGTAAAAGTGCTTAACAATGTACAATTCAGCACATCAATATACTCCAATACTTCCCCTTTCTTAAAAGGAgttaattacaaaaaaaaaaacagtttgaaCAAACTTAAAACAAACTCTGGGGGAAGTATGCGTAAATTCACAAAGTTCCTCACACTTGAACCAAGATTCAATGATTCATTTGTTTTCCTAGACAAGGATTTGACTATAAAATAATAACGCTGGAGGGAAACAGGCTTCCAGAAAATGAATGAATAGCATATGATTGATAAGACATTGgagaatatacagtgcattcggacagtattcagacccctttacttgtTTTTACGTTACAGGGCTCCcaagtgacgcagcggtctaaggcactgcatctcagtgctagaggtgtcactacagacaccctggttcgattccaggctgtatcacaaccagccatgattgggagtcccatagggcggaacacaattggcccagcatcattcGGTTTTGGaaggtgtaggccgtcattgttaaaaaaaactttaaaagccttaatctaaaatggattaaataaaaacatttcctcaacctacaaacaataccccataataacaaagtgaaaacaggtttttggatgtttattttttatttataaaaaactaaacagaaatactttatttacaaaaatattcagaccctttgttatgagacttggtgctcggtgcatcctgtttccattgatgatccttgagatgtttctacaacttgattggagtccacctgtggtaaattcatttgattggacatgatatggcaaggcacacacttgtctatataaggtctgaaggttgacagtgcgtgtcagggcaaaaaccaagccatgaggttgaaggaattgtccgtagacctcagagacaggattgtgtcaagggacggtaccaaaaaatgtctgcagcattgaaggtccccaagaacacagtttcctccatcattcttaaatgcgagcggtttggaatcaccaagactattcctacagctggccgcccggccaaactgagcaattgggggtgaagggccttggtaagggaggtgaccaaaacccaatggtcactctgacagagctccagagttcctctgtggagatgggagaaacttccagaaggacaaccatctctgcagcactccagagcgctcaggacctcagactggggtgaaggttcaccttccaacaggacaacgaccctaagcacacagccaagacaatgcaggagttgcttcgtgacaagtctcaatgtccttgagtggccaagccagagcctggacttaaacCCAATCAAagatctctggagacctgaaaatagctgtgcagcgacactccccatccaacctgacagaacttgggaggatctccagagaagaatggaagaaactccccaaatacaggtgtaccaagcttgtagtgtcatacccaataagacttgaggctgtaatcactgccaaaggtgattcaacaaagtagagtgaagggtctgaatacttatgtaaatgtgatatttcagttttgcatttttaatacattaacaaaatactgtttttgctttgtcattatggggtattgtctgtagattgatgaggaaaaaaacaaatgttatccattttagaacacggctgcaacataacaaaatgtggaaaaacgtcaaggggtctgaatccttgccgaatgcactgtacatggaaTCCTGCTTTAAATTCAAATCATTTCTATCCCAAAAAGCAATCCACATAATGGGATGTGCTGGCTGGTATAGAAGGATTAACCCAGGATATTATGTCAATCTCTTGTCACATACAGAAAGCATCTTAAAAGCAGTCTATTGTACACTTGTACAAAGGGCCAGTCTTAAGTCAGTGGATTTGGTTTCAAGAAATCTAAACCAAATCAGTTCGATTTGATTTCAAGACATGAATGCTAACTGTGAACAAAGGCAGATGGGTTATCTACTAGAAAACTCAATGCCATTCAGCTGTCTGACGTGTAATATTTTATTGACAGTTGGTCATCTAGTCTTTAAGAAAAaatgcttaaagaaaaaaatatgaattgCCATTCAATACTCAATGTTTCATTATAGTATTAAAAAAATCAATATGATTTTGTCATCCAGACTATGTGCATGTGAACATTGACACTTCTGAGGGCTAGAGTAAGTAGTATTTGGTGTTTTGGAGAACTCTgtctaaaataaattaatgtatgGTTCTTTAAACAACAAgtaataaaatgaaaccatcttaGATACGAAAGTAGAACTATAAGGTGCTGAAATACCAACAGCATTCCATTATGAATTATGCAAGGGAAAATGTCAAAGAAAACACTTCCTGCATCTAATGTGAATAAAACAACATATTGGTGCAGCACAAAGATTCAAACACTTAAAAAATGATGATTAAGGTACAATCCTTATATCAATAAGTGAAAGCGCAAGAAcctaaacattaaaaaaaagaaacacaAAAACCGTTTTTTTTTCTCATGAAACAGTCAAGCCACATCCCTTGGATAGTGAGTCTAAAAGAACAGAGTTGACGAGAGAGAAATGATTCAGGTGGAGTCTagtggaccacacacacacacacacctttgaaaTGTATTCGATCTTTACACTTGGTATAACAAAACAAATATTCTGCATACTTCCACTTTTAATAATTAAAGGAGCTTGGTGAACAATGCTTAAAACTTGACCTAGTAATGATTATGATTGAGCTTTATTTGTGTCCGCCAGTAAGATCACAGATAATTCAACCCAGGAAGTCCTTTCCATGGGCTGAATAAACCATGCCAGTAGCGTAAGTCGAACATTTGGTTTGATTCATCTAAGCAAAATTCTTTCAATACGTAGTTTAAGCCTTAAAATGAATGAAAATCAATAGCTCAGAGAATAATGAACACCATAATAATACATGTTTTAACAGGTTGATTTTTCATCATCTGTACATTAACATAAtgacaaaaaacaaaacactgcaatACATcactttataaaaaaaaaatgctttaggATAGTTCGGGCTTGTCTGGTGCTGCTGTGTGGTAGTCGGTAGTGAGGAGCGAGATGGTAGGGTCCTCTTCAGGGTCCTGGTCTTGGGTGAAATACGAGTCCCCCTCCAGCTCCAGCAGAGTGGGGAGGTCCGCTCCGCCATTCTCATTGGTCAGTGGGTCAGTCAGTAGCATTGGCTGGGAGGTGTACTGGACCAGCTGCTTCC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2635356 False 1234 lncRNA 0.40 2 18768654 18800607
TU2635359 True 3353 lncRNA 0.39 2 18768654 18772335

Neighbor

gene id symbol gene type direction distance location
si:ch211-80h18.1 LOC100499602 coding upstream 148 18741697 ~ 18768506 (+)
LOC100170213 LOC100170213 coding upstream 36203 18720992 ~ 18732451 (+)
LOC110488043 LOC106588968 coding upstream 99293 18607196 ~ 18669361 (+)
LOC110488042 LOC106570416 coding upstream 211366 18548953 ~ 18557288 (+)
ctnnal1 LOC106588976 coding upstream 319501 18324517 ~ 18449153 (+)
LOC110488045 LOC106570423 coding downstream 3111 18803718 ~ 18962860 (+)
LOC110488049 recql4 coding downstream 198026 18998633 ~ 19016439 (+)
LOC110488050 LOC106570429 coding downstream 221768 19022375 ~ 19041121 (+)
scrt1a LOC106570411 coding downstream 319344 19119951 ~ 19124074 (+)
dgat1a LOC106570407 coding downstream 553571 19354178 ~ 19379095 (+)
G2303845 NA non-coding upstream 17925 18749611 ~ 18750729 (+)
G2303763 NA non-coding upstream 164685 18603656 ~ 18603969 (+)
G2303758 NA non-coding upstream 170360 18598022 ~ 18598294 (+)
G2303752 NA non-coding upstream 174772 18593666 ~ 18593882 (+)
G2303892 NA non-coding downstream 41763 18842370 ~ 18842677 (+)
G2303963 NA non-coding downstream 168436 18969043 ~ 18969260 (+)
G2303980 NA non-coding downstream 184954 18985561 ~ 18985785 (+)
G2303968 NA non-coding downstream 216279 19016886 ~ 19017486 (+)
G2301841 NA other upstream 1575537 17186565 ~ 17193117 (+)
LOC110488022 tfpi2 other upstream 1934269 16827065 ~ 16834652 (+)
LOC110488019 LOC106570458 other upstream 1980115 16785333 ~ 16788539 (+)
G2301522 LOC106570460 other upstream 2091983 16669607 ~ 16693934 (+)
LOC110488017 LOC106570464 other upstream 2129013 16603599 ~ 16639641 (+)
G2304678 NA other downstream 1027610 19828217 ~ 19829961 (+)
G2305956 NA other downstream 1752726 20553333 ~ 20553684 (+)
G2306173 LOC106570399 other downstream 2012582 20813189 ~ 20814298 (+)

Expression


Co-expression Network