G2303854 (hsf1b)


Basic Information

Item Value
gene id G2303854
gene name hsf1b
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 18777345 ~ 18783027 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2635466
TTCAAAGAGGGGTGAGGACTCGAAATTGATGGACTGCGCGTTTAGGATAGTCTGGAGGTTTTCCAGGCCATTGTCGATGCTGTCCAAATGGTCACTCAGCTCACTCCTACACTTGTCTAGACAGGCGAGGCTGAGACACTTTTGCTCCGTAGGGGTCGTTGGGGCAGGGGACGCGTTAGGCTCGTTGCTCTCCTGCAGGATGGAGTTGATGAAGGTGATGGGGGACAGGGGAGTGTCTACCTGGACTCCTGCCCCACCGATCACGGCCTCTGCCGGACAGACCTCCTCCAACACGGGACTGGACGGCTCCTCCTTTATGTGGACCAATGGGCTCGTGctgaaga

Function

NR:

description
heat shock transcription factor 1b isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2635466 True 344 TUCP 0.57 2 18777345 18783027

Neighbor

gene id symbol gene type direction distance location
si:ch211-80h18.1 LOC100499602 coding upstream 8839 18741697 ~ 18768506 (+)
LOC100170213 LOC100170213 coding upstream 44894 18720992 ~ 18732451 (+)
LOC110488043 LOC106588968 coding upstream 107984 18607196 ~ 18669361 (+)
LOC110488042 LOC106570416 coding upstream 220057 18548953 ~ 18557288 (+)
ctnnal1 LOC106588976 coding upstream 328192 18324517 ~ 18449153 (+)
LOC110488045 LOC106570423 coding downstream 20691 18803718 ~ 18962860 (+)
LOC110488049 recql4 coding downstream 215606 18998633 ~ 19016439 (+)
LOC110488050 LOC106570429 coding downstream 239348 19022375 ~ 19041121 (+)
scrt1a LOC106570411 coding downstream 336924 19119951 ~ 19124074 (+)
dgat1a LOC106570407 coding downstream 571151 19354178 ~ 19379095 (+)
G2303845 NA non-coding upstream 26616 18749611 ~ 18750729 (+)
G2303763 NA non-coding upstream 173376 18603656 ~ 18603969 (+)
G2303758 NA non-coding upstream 179051 18598022 ~ 18598294 (+)
G2303752 NA non-coding upstream 183463 18593666 ~ 18593882 (+)
G2303776 NA non-coding downstream 4207 18787234 ~ 18790181 (+)
G2303892 NA non-coding downstream 59343 18842370 ~ 18842677 (+)
G2303963 NA non-coding downstream 186016 18969043 ~ 18969260 (+)
G2303980 NA non-coding downstream 202534 18985561 ~ 18985785 (+)
G2301841 NA other upstream 1584228 17186565 ~ 17193117 (+)
LOC110488022 tfpi2 other upstream 1942960 16827065 ~ 16834652 (+)
LOC110488019 LOC106570458 other upstream 1988806 16785333 ~ 16788539 (+)
G2301522 LOC106570460 other upstream 2100674 16669607 ~ 16693934 (+)
LOC110488017 LOC106570464 other upstream 2137704 16603599 ~ 16639641 (+)
G2304678 NA other downstream 1045190 19828217 ~ 19829961 (+)
G2305956 NA other downstream 1770306 20553333 ~ 20553684 (+)
G2306173 LOC106570399 other downstream 2030162 20813189 ~ 20814298 (+)

Expression


Co-expression Network