G2304434


Basic Information

Item Value
gene id G2304434
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 19335218 ~ 19344815 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2636175
aaatatcctatgggataaaatgaatgaaggaaccgcttttcagattttgctagaaggtgtcatgggaattatgactcgcactttggtagtcaattcttaccatgtccattattaaaataggatttcctgcatatagaaattacagtttttgttttcaacattcatcacaggtaacttaaactctatttttattcaaacagttgagagtatttgtctcctaagcagactcttcagtatcattgtcacttcagagctgtgtgtgtgttttacagatggcagagaaaagcagagcaccagTGTGGGACTATTACATGGAATTGGCAAGGTgaaagcaaggtgtcttatttgtggtaaagatgtaagcatggggtcagcaacggctaaataaaaaaataccaccaacctgtggaatcaccttaagaacacccatccaaaagcccatatgtattatattaagttcaaataaaagtgttcattgttcattcagtgttgttgcaattgtcattattacaaaaatgtgtatatttatatacatttaaaaaatcggccgattaatcggtatcggctttttttgtcctccaataatctgtatcggcgttgaaaaatcataatcggtcgacctctagtccagagtacatgtcctggtaatccatctagcCCCGCAGccatgtgaatgttgacctgtttaaaggtcttactcacatcggctacggtgagcatgatcacacagtcatccggaacagctgatgctctcatgcatgcctcagtgttgcttgcctcgaagcaagcatagaagtgatttagctcgtctggtaggcttgtgtcactgggaagcttacggctgtgcttccctttgtagtctgtaatagtttgcaagccctattCTGCCCTTTGAGTTGCGTTCccatgcaaaactagacagatagctaacaactaagtcttcaataaaactcccaaggcgtgacttttcttgaatgaatatattgaaaacgtttatgttgtgaaactgcaaaatacagaaaagaatatactttagtattcaattcacaccgacagtagctgtacattatacatttgaagttgcaTAAATACAAAGCACGTGCTAAGGTACCATGCATCTGGCATGATGCCAACCCATAGCTAATTGTTACTTATATGGTAATTAGCTCCTTTCATTACTCTAATAATGTACAACCATCTATGTAGAATAACAAAGCATATTACACTAGGAACAGTAACAAACTACAGTATTGTATATTTTACAATTCGTTTGCATGACGCACGAGCAAAGTAATACAGCTAACGACATACATGAAAAGCATTGCAATTTGTGAGTAAATGCAACCAACATTGACATGTAAGCAACtctatcaataacaagattatAACCATTAGCTAAATGCTTGAATTGaacttacaaacaaatattttccaaggctgaagcgtgacaagaaataactacattgaaagacctgcaccgtagcgttgtttgtagctgcttctatgcgtgcagaacaaattctctacttcctgtttgcGTTGTCTTTCTAAGTACCAGAAACATCCACTAGGGGGCAAATAACACCATTGCACACAATGAAAATCCAATTGAACCCttgtaataaaataatctgttaccttctaacaggatggcagcacaagccctgccacataagacgagtgtcggagccagtgtagtatgattcaatcttagccctgtattgacgctttgcctgtttgatggttcgtcggagggcatagcaggatttcttataggcttcctggttagagtcccgcaccttgaaagcggaagctctaccctttagctcagagtgaatattgcctgtaatccatggtttctggttggggtatgtacgtacagtcactgtggggatgacgtcctcaatgcacttattgataaagccagtgactgatgtggtgtactcctcaattccATCGGAAGAATctcagaacatgttccagtccgTGATTTAGcctctgcttcatctgaccactttttatagaccgggtcactggtgcttcctgctttcctttttgcttgtaagcaggaatcaggaggatagagttgtggtcggatttaccaaatggagggcgagggagagctttgtacgcgtttctgtgtgtggagtacaggtgatctagatttttccccctctggttgaacatttaacatgttgatggaaattaGGTAGAACTGtgttaagtttccctgcattaaagtctccggccactaggagcgccgcctctgggtgagtggtttcctgtttgcttatttccttatacatctgactgagtgcggtcttagtgccagcatctgtctgtggtgataaatgaacagccacgaaaagtatagctgaaaactctttAGGCAAGTAGTGTGGTATGCAATTTATCACAAGATACTCTACCCCAGgcaagcaaaatctagagacttccttagatttagtgcaccagctgttgtttacaaatatgtacAGACCCCCATcatcttaccggagtgtgctgttctatcttgccggtgcagcatatatcccgctagctgaatatccatgtcatcattcagccacgattccgtgaaacataagatataaccgtttttgatgtcccgttggtaggatattcgtgatcgtatcttgtctaatttattgtccaatgattgcacattggcgagtaatattgacagtaatggcagctttcccactcgacTTCTGCAGCTTCTTACGAAGCATCCCACTCTGTGTCCTCTGTAGCTGCgtctcttcctcttgcaaataactgggatgttggcc

Function

NR:

description
putative RNA-directed DNA polymerase from transposon X-element

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2636175 True 2810 lncRNA 0.41 2 19335218 19344815

Neighbor

gene id symbol gene type direction distance location
scrt1a LOC106570411 coding upstream 211144 19119951 ~ 19124074 (+)
LOC110488050 LOC106570429 coding upstream 294097 19022375 ~ 19041121 (+)
LOC110488049 recql4 coding upstream 318804 18998633 ~ 19016439 (+)
LOC110488045 LOC106570423 coding upstream 372358 18803718 ~ 18962860 (+)
si:ch211-80h18.1 LOC100499602 coding upstream 566712 18741697 ~ 18768506 (+)
dgat1a LOC106570407 coding downstream 9363 19354178 ~ 19379095 (+)
trpn1 LOC106570405 coding downstream 39769 19384584 ~ 19429517 (+)
LOC110488054 LOC106570404 coding downstream 123015 19467830 ~ 19539008 (+)
dennd3a dennd3 coding downstream 208375 19553190 ~ 19602824 (+)
ptk2aa LOC106570401 coding downstream 263163 19607978 ~ 19784439 (+)
G2304399 NA non-coding upstream 58353 19273987 ~ 19276865 (+)
G2304335 NA non-coding upstream 187008 19145056 ~ 19148210 (+)
G2304326 NA non-coding upstream 189048 19132005 ~ 19146170 (+)
G2304286 NA non-coding upstream 278937 19056071 ~ 19056281 (+)
G2304285 NA non-coding upstream 279151 19055773 ~ 19056067 (+)
G2304491 NA non-coding downstream 109926 19454741 ~ 19455451 (+)
G2304585 NA non-coding downstream 323359 19668174 ~ 19758204 (+)
G2304651 NA non-coding downstream 409342 19754157 ~ 19754686 (+)
G2304575 NA non-coding downstream 439769 19784584 ~ 19788459 (+)
G2303854 hsf1b other upstream 552191 18777345 ~ 18783027 (+)
G2301841 NA other upstream 2142101 17186565 ~ 17193117 (+)
LOC110488022 tfpi2 other upstream 2500833 16827065 ~ 16834652 (+)
LOC110488019 LOC106570458 other upstream 2546679 16785333 ~ 16788539 (+)
G2304678 NA other downstream 483402 19828217 ~ 19829961 (+)
G2305956 NA other downstream 1208518 20553333 ~ 20553684 (+)
G2306173 LOC106570399 other downstream 1468374 20813189 ~ 20814298 (+)
LOC110488072 LOC106570395 other downstream 1962617 21307432 ~ 21311878 (+)

Expression


Co-expression Network