G2304659


Basic Information

Item Value
gene id G2304659
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 19793913 ~ 19795081 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2636428
tgtaagtcgcttggggtatgtctatcagttttgcacatcgagagactgacattttttcccattcctccttgcaaaacagcttgagctcagtgaggttggatggagagcatttgtgaacagcagttttcagttctttccacagattctcaattggattcaggtctggactttgacttggccattctaacacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtgggaatggtgtgttcagagtgatgagctgtgttgcttttacgccaaacataacattttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaaagacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcttccagagtgatcatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtagtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttgacggacctctgagaatatcacagtgcaggtgcattgatacggagacttgattacacacaggtggattgtatttatcataattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttg
>TU2636427
tgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtgggaatggtgtgttcagagtgatgagctgtgttgcttttacgccaaacataacattttgcattgttgccaaaaagttcaattttggtttcatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaaagacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatctctgcagttcttccagagtgatcatgggcctcttggctgcatctctgatcagtcttctccttgtatgagctgaaagtttagagggacggccaggtcttggtagatttgcagtagtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttgggaaatctttttgtatccaaatccggctttaaacttcttcacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgcttttgacggacctctgagaatatcacagtgcaggtgcattgatacggagacttgattacacacaggtggattgtatttatcataattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataa

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2636428 False 1141 lncRNA 0.43 1 19793913 19795053
TU2636427 True 933 lncRNA 0.44 1 19794149 19795081

Neighbor

gene id symbol gene type direction distance location
ptk2aa LOC106570401 coding upstream 9474 19607978 ~ 19784439 (+)
LOC118946534 NA coding upstream 13600 19777269 ~ 19780313 (+)
dennd3a dennd3 coding upstream 191089 19553190 ~ 19602824 (+)
LOC110488054 LOC106570404 coding upstream 254905 19467830 ~ 19539008 (+)
trpn1 LOC106570405 coding upstream 364396 19384584 ~ 19429517 (+)
LOC118946489 NA coding downstream 199061 19994142 ~ 20001374 (+)
LOC118946542 NA coding downstream 919988 20715069 ~ 20719092 (+)
ccdc127b ccdc127 coding downstream 1408011 21203092 ~ 21205705 (+)
LOC110488068 cfap69 coding downstream 1427840 21222921 ~ 21231008 (+)
LOC110488070 NA coding downstream 1438262 21233278 ~ 21238489 (+)
G2304658 NA non-coding upstream 222 19793270 ~ 19793691 (+)
G2304575 NA non-coding upstream 5454 19784584 ~ 19788459 (+)
G2304585 NA non-coding upstream 35709 19668174 ~ 19758204 (+)
G2304651 NA non-coding upstream 39227 19754157 ~ 19754686 (+)
G2304703 NA non-coding downstream 88104 19883185 ~ 19924959 (+)
G2304816 NA non-coding downstream 265586 20060667 ~ 20061476 (+)
G2305932 NA non-coding downstream 745028 20540109 ~ 20540334 (+)
G2305934 NA non-coding downstream 746341 20541422 ~ 20541721 (+)
G2305935 NA non-coding downstream 746701 20541782 ~ 20541987 (+)
dgat1a LOC106570407 other upstream 434124 19354178 ~ 19379095 (+)
LOC110488049 recql4 other upstream 778320 18998633 ~ 19016439 (+)
G2303854 hsf1b other upstream 1010886 18777345 ~ 18783027 (+)
G2301841 NA other upstream 2600796 17186565 ~ 17193117 (+)
LOC110488022 tfpi2 other upstream 2959528 16827065 ~ 16834652 (+)
G2304678 NA other downstream 33136 19828217 ~ 19829961 (+)
G2305956 NA other downstream 758252 20553333 ~ 20553684 (+)
G2306173 LOC106570399 other downstream 1018108 20813189 ~ 20814298 (+)
LOC110488072 LOC106570395 other downstream 1512351 21307432 ~ 21311878 (+)
G2306688 NA other downstream 1525542 21320623 ~ 21323896 (+)

Expression


Co-expression Network