XLOC_004190


Basic Information

Item Value
gene id XLOC_004190
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 29537982 ~ 29544989 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008811
ttttaaacattttattggaAGTCAGAAAGCAAACTCAGGAAACAGCAAACACCTAAGACTTCACTTGTTGCAACAGCCTGAACAACTTCTGCGATGAATGCCCATTTTGAGCATGTCCAGGATTATTTTGACCTGTAACCAACTTGTTTTCAACCTGTTGTGGAATTGCAAATTCAGGTTGCACTGGCTGAAACACAGACTCATGGTTTGAAACTTCTGGACCACTCAAGGCTTGGGAACTTGTAGACTGGTGACTTGATGGCACAAGCTCTGAAGTAGTTTGAAATCCAGGCTGTAAGACAGTCTCATAACTTGATTGTACaagaggctggaagctggactGCAATGGCATGCCTGAAGAAGAGCTGGACTGAGTGAGAGACAGACTACCAGGCTGCATTTGAGGCTGGGAAACAATCTGTCCTGGAACAGGGGATATCTggtattcagcaaaagagacagatTCTGAGCTTGATTGTGCCACAGGCTGGTACATGGGTTCCACTGGCAAAGCTTGAGAGTAGACAGGCAGAGATAGAGACTGATGGCTAGGATGAGCTGGTGATAAAATGGATTGGAGTGTAGATGTGTGGGGTTTGGGATGCTTAGACTTTGTAGGGGTCTGGTTGCCGGACTGTACAACAGGCTTGGTGTGCGAAGTTACAGCTGGAGACTGAAATCTCCTCTGGTAACCATGCTGAGGTAACTCTTGACATGAATAAAGACTGGAGCCAATCTGGTGAACCCTATGGGAATGCACCGGCTTGAAATGCGATTGTCCACTCTGCTCAACAACATACTCATGGGTGGAGTGTCCTGCTTGCTGGCTGATAGGTAGGGATACAGAGAAGTCAACATGCGCTGGCTGTTGAAGACCGAGCTGTGCCACCCACTGTGAGCCGGGCTGCACTGGTAGTGGCACACTGGCCTGGCTTGCAGACTGATAGCCGATTTGTGCTGGTTGAACAACAATTTGGGGCACAGTTAGGTAGCTGGTTTGTCCTGGCTTTTGGGAAGCAGACTGGGCCTCTGATTGGTAGATGGCTTGTAGTGGCAGTTGTAGACCATGTTGGGGCACAGACTGGTAGGTGGTTTGTACTGGCATTTGGCTAGTGGACTGAGCTACAAGACTTGAGCTTGGTTTATAGACAGGACTGGTACTGGATGGAGGCTTGGACCCAAACTGAGGTCTACCTTTGTGGGGCTTGAGAAGAGTCAGGCTGCTGGGCTGAGCAGTCAAGACATAACTACCGTGTAGTGGTTTCTGGTCATTTGACTGGGAAATGGATTGGCTTGTCTGAACTAGCTGTTGACTGGTGGCCTGTTCTACAGTGGCATCGACTTCCTGTTGAATCAGCTGACTGCTGGGCTGAACAGAGATGTCAACATGGGGAGGCTGCATGCCGCTTGGCTGACTTGCAGTCTGGCCACTGGACTGGCTGACAAGTTCATAGTTAGCCATAGCTAGGCTGCTTGGCATACTGCCATATAGTAATATTGGTGCAGACTCCTTTTTAGGAGTAAGGGGCTTTGAATTGAATACTGGATTTTGAACTGGCCTGGTACCAAAAACAGTATTAGAACCAGACTTGTGGGGCAGTCTATTGGCATAAACTGCAGACTGGAAGCCAGGTTGTGGAAGTTGATGGCCGCTGGTCTGGGACAACTGGAGAGAGACAGACTGGGCCATGGTTCCAGAACTTGCTGGTTGCTGACTGTTGGACTGGGGGCCAGTCTGCACTTGGGAAGTTAACAGCACAGGCTTAGGAACAGAGTAACTGCTTTGCTGCAGTGGCATCAAGACTGAAGAGCTGATGACTTCAGATTCTTGGACATCAGTTGATTGGTTCATATCATACTCAGACACGGCCAGACTTGCTTTATTTCCCACTGTACCATAAACGAGACTACCACTTCCAGCTACAACACCAGATCCTTGAAGTTGGCTTCTAGTGGAAGAATCAGAGCTTGGTTTTTCACTTGTGATGGAAACACCTGAAGAGCCAGCCAGAGAACTGTAGCTTCCGATATCATAGCCACCTTTTACTGCAGCACTATACCCAGTATAGCTGCCCATGCTTCCAGGGCTACTTGCAATAAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008811 True 2101 lncRNA 0.48 2 29537982 29544989

Neighbor

gene id symbol gene type direction distance location
XLOC_004188 NA coding downstream 218063 29099927 ~ 29319919 (-)
XLOC_004187 NA coding downstream 449356 29085366 ~ 29088626 (-)
XLOC_004186 igsf21a coding downstream 455553 28642913 ~ 29082429 (-)
XLOC_004185 klhdc7a coding downstream 898484 28633717 ~ 28639498 (-)
XLOC_004184 dhrs3b coding downstream 923374 28590733 ~ 28614608 (-)
XLOC_004191 chd5 coding upstream 29754 29574743 ~ 29658396 (-)
XLOC_004192 nr0b1 coding upstream 137920 29682909 ~ 29685853 (-)
XLOC_004193 NA coding upstream 189589 29734578 ~ 29737247 (-)
XLOC_004194 plekha3 coding upstream 211871 29756860 ~ 29768054 (-)
XLOC_004195 cybb coding upstream 250166 29795155 ~ 29833698 (-)
XLOC_004063 CR854846.1 misc downstream 13410304 16127382 ~ 16127678 (-)
XLOC_004019 CR450764.8 misc downstream 16846291 12691395 ~ 12691691 (-)
XLOC_004015 CR450764.4 misc downstream 16916215 12621518 ~ 12621767 (-)
XLOC_004013 CABZ01022569.1 misc downstream 16946686 12590999 ~ 12591296 (-)
XLOC_004008 BX000700.19 misc downstream 17024720 12512966 ~ 12513262 (-)
XLOC_004183 BX649345.1 non-coding downstream 1012486 28522364 ~ 28525496 (-)
XLOC_004182 NA non-coding downstream 1015638 28513742 ~ 28522344 (-)
XLOC_004181 NA non-coding downstream 1113841 28418876 ~ 28424141 (-)
XLOC_004198 CU652893.1 non-coding upstream 416125 29961114 ~ 29961901 (-)
XLOC_004200 CR318645.1 non-coding upstream 556153 30101142 ~ 30101257 (-)
XLOC_004211 NA non-coding upstream 1655230 31200219 ~ 31202839 (-)
XLOC_004212 NA non-coding upstream 1659936 31204925 ~ 31211308 (-)

Expression


Co-expression Network