G2306173 (LOC106570399)


Basic Information

Item Value
gene id G2306173
gene name LOC106570399
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 20813189 ~ 20814298 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2638086
TCGGGCTTGACCTCCAGCACGCCATGGGTGGCATGGGCGCTGTCGTAGTGCAGCAGGAGCAGGTCGATGTCGCTGGTGGCATAGGGACACTGGTCACACAGGTGGGTGACACTGGGCCTGGGGGACGGGGAGATGTCCTGGGGAGACAGCTGCAGTAGGAGGCGGGCACAGTGGGAGCAGGCACTCTTCCTGCAGGCGAACGGGTAGGAAATCTCCCCCAGGTGCTTCTCGGGGCTGCAGAGGCCACGCGGGCAGAACGGGCAGTGCTTGATGGTGCACTTATGGATGCTGTGGGCCTGCTGGTAGTGGCGGAGCAGAGGCGCTACCACAATAACCTCAGGCCCGTGGTTCATGGAGTAGCGGAAGTCACAGAACTGGCAGTTGTAGCTGGTCACCACCGTCTCTGGGTCTGTTGCCCCCGTTGTGCCACCCATTCCTGTCTTGTCTTTCCTCCGGCTGTGGGGGGTCAGGTCTCGatcagggtctctctctctgtccctggcctTGCtgctccctcgttccctctcggCTGGGCTGCCCTCCCTGGTCCCTCCTCCCCCAGGCTGGTTGTGTCTCTTCTCGTAGTGCTCCAGGAGGCGTTGTGAGCTGGGCGACTCACAGCTGAAGCTGCAGTACTTACACCAGTAATAGTCCGCCGCTGTGGCGCCGCCGTCGGTCCCCGTCCAGCCAGGGGAGTCGGTGGCGCGGATGGGAACAGAGTAGCCAGCCACCGAGTCGTCCTCCGCACGGACCGCCACCCGGTCCGCCCACTTTCCCGGTTCCGCCCCCTCTGCACCACCGCCCCGTGTCACACAGTTCCCCCTCCTGTCCGAGGGCTTGTCGTCATTGGGCAGCTGTGGGGGGTGGGACTTCATCTTGTTCGGGTGGGCAGACAGAAAGTGCTGCTCCAGCTCCAAGGAGGAGCTGCCCATGTAGGTGAAGTTACAGAACTTGCAGCGGAAGTACTTGGTGTTTCCCTGACAGTCCGGAGTCTTCCTCCC
>TU2638087
TCGGGCTTGACCTCCAGCACGCCATGGGTGGCATGGGCGCTGTCGTAGTGCAGCAGGAGCAGGTCGATGTCGCTGGTGGCATAGGGACACTGGTCACACAGGTGGGTGACACTGGGCCTGGGGGACGGGGAGATGTCCTGGGGAGACAGCTGCAGTAGGAGGCGGGCACAGTGGGAGCAGGCACTCTTCCTGCAGGCGAACGGGTAGGAAATCTCCCCCAGGTGCTTCTCGGGGCTGCAGAGGCCACGCGGGCAGAACGGGCAGTGCTTGATGGTGCACTTATGGATGCTGTGGGCCTGCTGGTAGTGGCGGAGCAGAGGCGCTACCACAATAACCTCAGGCCCGTGGTTCATGGAGTAGCGGAAGTCACAGAACTGGCAGTTGTAGCTGGTCACCACCGTCTCTGGGTCTGTTGCCCCCGTTGTGCCACCCATTCCTGTCTTGTCTTTCCTCCGGCTGTGGGGGGTCAGGTCTCGatcagggtctctctctctgtccctggcctTGCtgctccctcgttccctctcggCTGGGCTGCCCTCCCTGGTCCCTCCTCCCCCAGGCTGGTTGTGTCTCTTCTCGTAGTGCTCCAGGAGGCGTTGTGAGCTGGGCGACTCACAGCTGAAGCTGCAGTACTTACACCAGTAATAGTCCGCCGCTGTGGCGCCGCCGTCGGTCCCCGTCCAGCCAGGGGAGTCGGTGGCGCGGATGGGAACAGAGTAGCCAGCCACCGAGTCGTCCTCCGCACGGACCGCCACCCGGTCCGCCCACTTTCCCGGTTCCGCCCCCTCTGCACCACCGCCCCGTGTCACACAGTTCCCCCTCCTGTCCGAGGGCTTGTCGTCATTGGGCAGCTGTGGGGGGTGGGACTTCATCTTGTTCGGGTGGGCAGACAGAAAGTGCTGCTCCAGCTCCAAGGAGGAGCTGCCCATGTAGGTGAAGTTACAGAACTTGCAGCGGAAGTACTTGGTGTTTCCCTGACAGTCCGGAGTCTTCCTCCCGATGCCAATGAAGGTGCCTCCCAGCGTCACCTGGAACAcaatgaagaagaggaagagacatCAACTCATGTTGATTATGCATTTCGCTTCAATGTATTTTTTCTTCCGC

Function

NR:

description
zinc finger transcription factor Trps1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2638086 False 1001 TUCP 0.63 1 20813189 20814189
TU2638087 True 1110 TUCP 0.61 1 20813189 20814298

Neighbor

gene id symbol gene type direction distance location
LOC118946542 NA coding upstream 94097 20715069 ~ 20719092 (+)
LOC118946489 NA coding upstream 811815 19994142 ~ 20001374 (+)
ptk2aa LOC106570401 coding upstream 1028750 19607978 ~ 19784439 (+)
LOC118946534 NA coding upstream 1032876 19777269 ~ 19780313 (+)
dennd3a dennd3 coding upstream 1210365 19553190 ~ 19602824 (+)
ccdc127b ccdc127 coding downstream 388794 21203092 ~ 21205705 (+)
LOC110488068 cfap69 coding downstream 408623 21222921 ~ 21231008 (+)
LOC110488070 NA coding downstream 419045 21233278 ~ 21238489 (+)
slc9a1b slc9a1 coding downstream 445961 21260259 ~ 21274297 (+)
LOC110488071 LOC106570376 coding downstream 463267 21277565 ~ 21307347 (+)
G2306169 NA non-coding upstream 8587 20804373 ~ 20804602 (+)
G2306108 NA non-coding upstream 100880 20712020 ~ 20712309 (+)
G2306092 NA non-coding upstream 126290 20686430 ~ 20686899 (+)
G2306087 NA non-coding upstream 133813 20679129 ~ 20679376 (+)
G2306176 NA non-coding downstream 1967 20816265 ~ 20816468 (+)
G2306172 LOC106570399 non-coding downstream 3505 20817803 ~ 20818270 (+)
G2306202 NA non-coding downstream 49355 20863653 ~ 20863872 (+)
G2306211 NA non-coding downstream 58981 20873279 ~ 20873501 (+)
G2306214 NA non-coding downstream 67510 20881808 ~ 20882229 (+)
G2305956 NA other upstream 259505 20553333 ~ 20553684 (+)
G2304678 NA other upstream 983228 19828217 ~ 19829961 (+)
dgat1a LOC106570407 other upstream 1453400 19354178 ~ 19379095 (+)
LOC110488049 recql4 other upstream 1797596 18998633 ~ 19016439 (+)
G2303854 hsf1b other upstream 2030162 18777345 ~ 18783027 (+)
LOC110488072 LOC106570395 other downstream 493134 21307432 ~ 21311878 (+)
G2306688 NA other downstream 506325 21320623 ~ 21323896 (+)
G2306825 NA other downstream 772790 21587088 ~ 21587434 (+)
c32h5orf49 cssa14h5orf49 other downstream 1591719 22405971 ~ 22416346 (+)
G2308224 NA other downstream 1790022 22604320 ~ 22604721 (+)

Expression


Co-expression Network