G2306172 (LOC106570399)


Basic Information

Item Value
gene id G2306172
gene name LOC106570399
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 20817803 ~ 20818270 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2638084
AACCGTGTGGACCCTGCAGCATCCTGTAGCACTCCGGTCAGGGCAGCGTGGGACGGGGGCCGTGTAGCGTCTTTGGCGTGAAGGCTCTGTGGGGAGAAGCCCACCATGTTGTGCAGGGCCAGTATCTTAGTGTCCAGCTCCGCGTCCTGCCGCGTGCGGTTGTGCAGGCCCAGGTGGTACTTCCGGAAGTGTTTGATCAGGTCCGTGGGGTCGTTCCCATAGTAACCATACCCACATATGTTGCACTTGAAGTCCTGCAAtttgggagaggaaggaggggctACCCCTGTCTCGGGCCCCAGGGGACTGGGCATGGTGTCCTCGGCCCCCTCACCTACTCCCCTGTGTGGGTGGAGAGGGCGTAGCAAAGGGTATCCAGAGCTATCCATACCATCCTGGTGACCTGAGAGACCTCCTGTGGGGCTGTAGGAGGGGTCCCTGTCCTCGCCGTTACGGGTGACGCCCTGG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2638084 True 468 lncRNA 0.62 1 20817803 20818270

Neighbor

gene id symbol gene type direction distance location
LOC118946542 NA coding upstream 98711 20715069 ~ 20719092 (+)
LOC118946489 NA coding upstream 816429 19994142 ~ 20001374 (+)
ptk2aa LOC106570401 coding upstream 1033364 19607978 ~ 19784439 (+)
LOC118946534 NA coding upstream 1037490 19777269 ~ 19780313 (+)
dennd3a dennd3 coding upstream 1214979 19553190 ~ 19602824 (+)
ccdc127b ccdc127 coding downstream 384822 21203092 ~ 21205705 (+)
LOC110488068 cfap69 coding downstream 404651 21222921 ~ 21231008 (+)
LOC110488070 NA coding downstream 415073 21233278 ~ 21238489 (+)
slc9a1b slc9a1 coding downstream 441989 21260259 ~ 21274297 (+)
LOC110488071 LOC106570376 coding downstream 459295 21277565 ~ 21307347 (+)
G2306176 NA non-coding upstream 1335 20816265 ~ 20816468 (+)
G2306169 NA non-coding upstream 13201 20804373 ~ 20804602 (+)
G2306108 NA non-coding upstream 105494 20712020 ~ 20712309 (+)
G2306092 NA non-coding upstream 130904 20686430 ~ 20686899 (+)
G2306202 NA non-coding downstream 45383 20863653 ~ 20863872 (+)
G2306211 NA non-coding downstream 55009 20873279 ~ 20873501 (+)
G2306214 NA non-coding downstream 63538 20881808 ~ 20882229 (+)
G2306528 NA non-coding downstream 218497 21036767 ~ 21037087 (+)
G2306530 NA non-coding downstream 220006 21038276 ~ 21038669 (+)
G2306173 LOC106570399 other upstream 3505 20813189 ~ 20814298 (+)
G2305956 NA other upstream 264119 20553333 ~ 20553684 (+)
G2304678 NA other upstream 987842 19828217 ~ 19829961 (+)
dgat1a LOC106570407 other upstream 1458014 19354178 ~ 19379095 (+)
LOC110488049 recql4 other upstream 1802210 18998633 ~ 19016439 (+)
LOC110488072 LOC106570395 other downstream 489162 21307432 ~ 21311878 (+)
G2306688 NA other downstream 502353 21320623 ~ 21323896 (+)
G2306825 NA other downstream 768818 21587088 ~ 21587434 (+)
c32h5orf49 cssa14h5orf49 other downstream 1587747 22405971 ~ 22416346 (+)
G2308224 NA other downstream 1786050 22604320 ~ 22604721 (+)

Expression


Co-expression Network