G2308198


Basic Information

Item Value
gene id G2308198
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_050572.1
NCBI id CM025859.1
chromosome length 41837469
location 22611264 ~ 22614686 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2640330
GCCGTAACTTTTATTGCACATTCCTGTTTGGTCTTGCAACGACCTTTCACCTTTTTAACCATTGACCTCGGTCTGGACTAGACACTTCAGTCGGGAGTCGGGTGAAGTTGCTCATAGAAACTGATCTAGGAACATATTTGCacattccactctaatggttagggtttaggcagggtaagctgatcctagatctgtgcctaaggcCAACTTCTACCCAAGCAGTAACGCAGTCCGGAACCAGAGAAAGAAGGATGGACATTGGTGATATCACAGAGGAGAGTAGGAAATACATGTGAGAGCCAAGAGTTGACTGATCCTTCAGTTCCATTGAGCTCCATAGATTACTTCCTGGAGAATGTTGGGGCTTTATGACATCATTATCTAGTCCTTCTTAATCTGGTTCCTTGAAAGTCTCCCACAAAATATACACCTGAACACCCTTCTGACACAGATACACATCATCATTCTTAGTTCGgatttatttttctctttttctgtGACAATACCTGCGACATGCTTCAAAATCTTCATTTTGGCAAACCACAAATAAATTAAAACACAAACATTCAGAGAACACAACGTGACAGTATTTTTTAGGGTAGTCGGAAAGAAAAATATACATACAGAAAACAGAAATCAAGAGAACAAGAGAAGAGAAGCATTTTACTGTTCGTTTTTTACCCCGACTTCGTTTTTTTCGTTGCTTTTCTTGAAAAAAAGATAGCTAGCTACCAATCACTTACCACATGCAGATATAATACAGAATCGATTCACTCAGTTAGTGTCTGCAAACTACCGATCTAAACTATATCACAAAATGATACTTTTTAAACCAGCAAACACCCAATTTGGAGATATTTCATCTTCTATTAATTGTTCACTTTACAGTAGATTTCTCCTCTCATCGTAACGCCCAGTGAAACACCCACAGCCAACCCTGACTTCACTGCCCACAAAAGAAGAGAGAAGACCATCATCAGCATTGACTTATgcctcatcccaaatggcaccctattccctacatagggctctagtcaaaagtagtgcactagatgggTATTACAGTATGGAACCATTTTGAAACCTACCCTTTCCCATGATTAGATACCAGATGGTGATTTCTTTAACTTTCTCCAAGGGAGCATCACAGACACAGCAACCCCTCTCACACACATGTCATCCCCCCTGATGAGGAACATACTGTATAAGAACATGCTGTATGAACATTGCCTTACACACAATGTAAAGCAAAAAATTAGATGTGCGGAGCTCTGGGAAGTGAGAGTGACAGAATGTCAGAGCAgagttggatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgagtgagtgagcagaGCAGGACATATGATGGCATCACTCTCACTAGTTATTCATCTgacaactctgtctctctgttcaaATTTCACCGCAATAAGCAGCTATCTCTCTGTAGTGCTCATTCACAGCCACACATATAATGCACGGCATAGGAGGGACTTggagtctagagagagagagtgtgtgtgtgtgtgtaattgttatgaaactcacacacacacacacacacatacacgcttcTCTTCAGCCATTTTGGATTCCAGCTGACATTTTGAGAAGCCGTCGGGAGACATCAAAGCTTGCCACgcacccttctctcttcctcttcctcccgtgttccctctcttcctccctctaatCCAGACATCAATCAGGAGCTCACTGAGACACGCTCATCTCTCAGAGGACACTCGTTTATTattccaccactccatcctcaCCAGGGCTCTGCTTTGTCCATCCTCATTTAGGGGtatcgtgtgtgtatgtgtatgaatATCAGCTCTAAATGTTAaggagtgtgtatgtgatgtgccAATGCAAAATAGCCACTCTGAAGTGTGTGGTGTACAATCCCATGGGGAACTAGTAGAGATGATAATTTCCTCTGGTCAggacatcatcatcattaccccTGTAACAACATCTCCATATAGTAATAATGTACTAATACCATTACTGGCATACTGACGGTAAAGAGATCAGCACAGTACAGTTACCATCACATAGGAACACAATGAAAAGCCATGttgagacacacacatgcatgaaagCACACACACCCTTCATGTGCCTGGTTATTAGCTAGACCATCTGGTATCTAAATCATGGGAATTATAGCTGCTGGTCTTCTCCTACACATGATAatatgacgagagagagagagtgagaggtgagagagattaagagagagctagaaagagtagagagaggggagagagagagagcgcagtaGTTGACTGCCATTCTCTTCATCGTACAGAGTCTATGGGTATAAAACAAgtgatgttttttctccattAGAAATCAATAACCATGTATGCAACACAGTGAGGTCTAAATTTAGCcacaaagagggagagaatgagagagaggagaacaaacgatagagagatagagagcacaGCTCTACATACATTACAATCTTCATGTTGCATTGAACTGTGAAAAACAGCACAGTCAAAAGGAAAAGAAaggaacagagagaaaaagaagagaaAAGGAAGGGGTGAATGCGTGAGCTGCCGTCCTGCACTGCCAGTCTATTAAACATCAACAGGCTGGTTTGTAGGTAAAGGATCAAGCAGGCAGAGGGGATGGAAAGTTTGACTTCAGTTCAGTGCAGTGTGGTGCCAGCttggagagaaggatgagaggagaagaggagaggagggaaggtgaGCAGGGAAGGTGGGGTAAAGGTTGGAGAGGAGAATACATCGCCCTCTTCGCAGTAGTCTTTCACAGTCTTTACCCGTAgatccacacacagtctgtctgaatgtccctcagtgtgtgtgggtgtgtgtgtgtcggaaaCCCAATCCATGGCCCGCTGTGACACACACTCCACTGACACACCCTCCACTGACAGACACACCTCACTCTGAACCCTCTATTCAGccgaagggagagaaagagaaagtgaaggagggagggaaccaGGGACAGAGGAGTGCAGCGCTGGAGGGATGTGGAGAAATGACGACTTGATGATGGCAATGATCGGCAAAGTGAAGAAGTAGACCTCGATGACGAGCGTTCGTTTGTTCATTTTTCTGAAGAGTTTCAGTGAGGTGATTgaaacaacaaaaactaaaaacaaaacaACTGGAGCGGTGGAGCTGTAGTGTcaagaaggaggaggagttgaATTAGCGTGGTGCGTCGTGGTTAGCATGGCTAGCTAGCGTCATGGCCAACCTCTTTCCTCAGCCGTCAGACACAGGGGGGGAGACCCAGCCGTACTTCTCGTGGGTCTTCACCAGACTCTTAAAGGTGGCCTCTGCCTCTTTGCGGCTAAAAGCCTTCTTGGACTTCCCTGCTTTCCTGCAGATACGCC

Function

NR:

description
hypothetical protein Z043_109181

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2640330 True 3403 lncRNA 0.44 2 22611264 22614686

Neighbor

gene id symbol gene type direction distance location
LOC110488106 NA coding upstream 31276 22573249 ~ 22579988 (+)
LOC118946522 NA coding upstream 38822 22566701 ~ 22572442 (+)
LOC118936411 NA coding upstream 45374 22552486 ~ 22565890 (+)
c32h5orf49 cssa14h5orf49 coding upstream 194918 22405971 ~ 22416346 (+)
LOC110488102 LOC106570350 coding upstream 389162 22214554 ~ 22222102 (+)
LOC110488108 LOC106588698 coding downstream 15496 22630182 ~ 22646620 (+)
LOC110488110 LOC106570331 coding downstream 251102 22865788 ~ 22871890 (+)
mrpl36 LOC106570330 coding downstream 271457 22886143 ~ 22889735 (+)
LOC110488115 lpcat1 coding downstream 280337 22895023 ~ 22929387 (+)
LOC110488113 LOC106570326 coding downstream 315205 22929891 ~ 22948107 (+)
G2308216 NA non-coding upstream 24902 22586086 ~ 22586362 (+)
G2308215 NA non-coding upstream 25340 22585721 ~ 22585924 (+)
G2308211 NA non-coding upstream 30148 22580869 ~ 22581116 (+)
G2308208 NA non-coding upstream 37517 22566627 ~ 22573747 (+)
G2308253 NA non-coding downstream 40787 22655473 ~ 22655791 (+)
G2308287 NA non-coding downstream 104912 22719598 ~ 22724414 (+)
G2308413 NA non-coding downstream 147708 22762394 ~ 22762706 (+)
G2308467 NA non-coding downstream 237060 22851746 ~ 22852331 (+)
G2308517 NA non-coding downstream 296847 22911533 ~ 22913026 (+)
G2308224 NA other upstream 6543 22604320 ~ 22604721 (+)
G2306825 NA other upstream 1023830 21587088 ~ 21587434 (+)
G2306688 NA other upstream 1287368 21320623 ~ 21323896 (+)
LOC110488072 LOC106570395 other upstream 1299386 21307432 ~ 21311878 (+)
LOC110488133 NA other downstream 1364664 23979350 ~ 23981983 (+)
LOC110488142 LOC106570295 other downstream 1537001 24151527 ~ 24157473 (+)
G2311528 NA other downstream 3120508 25735194 ~ 25736847 (+)
G2311978 NA other downstream 3304466 25919152 ~ 25919800 (+)
G2312300 NA other downstream 3710466 26325152 ~ 26325383 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G157080 NA non-coding CI01000030 null 41362 ~ 41576 (+)
grasscarp (Ctenopharyngodon idella) G235582 NA non-coding CI01000054 null 9582422 ~ 9664231 (-)
rainbow trout (Oncorhynchus mykiss) G233754 NA non-coding NC_048567.1 CM023221.2 20927898 ~ 20932727 (+)
eurasian perch (Perca fluviatilis) G132568 NA non-coding NC_053124.1 CM020921.1 10812795 ~ 10816581 (-)
bowfin (Amia calva) G124094 NA non-coding CM030136.1 CM030136.1 19391123 ~ 19394724 (+)
tiger barb (Puntius tetrazona) G120700 NA non-coding NC_056715.1 CM032084.1 12962605 ~ 12963160 (+)